PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG535400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family E2F/DP
Protein Properties Length: 318aa    MW: 35351.6 Da    PI: 9.0138
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG535400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP80.51.5e-2574154171
              E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                          rkeksL+lltq+f+kl+ + e ++v+l+e+ak L+ e     ++++k+RR+YDi+NVL++lnliek     ++k+++rw g
  Pavir.1NG535400.1.p  74 RKEKSLGLLTQNFVKLFLTLEVDTVSLDEAAKLLLGEgheetNMRTKVRRLYDIANVLSSLNLIEKiqqgdSRKPAFRWLG 154
                          79********************************************************************99*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.6E-2371155IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.2E-3174154IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.1E-2075154IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.3E-1376155IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MALRELKERA LREKSGLAPL QTEQQSASTM SDDEDDDKLG NPDGDIENEK LSQTVDNPSD  60
KPGAPRCRLR SDHRKEKSLG LLTQNFVKLF LTLEVDTVSL DEAAKLLLGE GHEETNMRTK  120
VRRLYDIANV LSSLNLIEKI QQGDSRKPAF RWLGRAARPN AENAVTVAVP PPGKTVSNKR  180
AFGTDITNMG VHRSNQDSNI QKKAKLAQSG GDILKNCKSV VQSRLGQGKK SGFVYGPFHP  240
AGARKHELDV GNKPGQRERA EDWESLSAAF RPQYQNQALG DLFAHYVEAW KTWYSEFAQG  300
SNIMQQHFDQ SAVNHFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A7e-1674146152228Transcription factor E2F8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG535400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795108.10.0E2F transcription factor-like E2FE
TrEMBLA0A2T7FBR10.0A0A2T7FBR1_9POAL; Uncharacterized protein
STRINGPavir.Aa00738.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-61DP-E2F-like 1