PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG528600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 628aa    MW: 69939.4 Da    PI: 7.2694
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG528600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.84.4e-07510557347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                          +WT  E  +lvd+v+++G g W+ I +        Rt  ++k++w+++
  Pavir.1NG528600.1.p 510 AWTLCEVMKLVDGVARFGAGKWSEIRKLSFssySYRTSVDLKDKWRNL 557
                          7************************9999999*99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.147503562IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-11505560IPR009057Homeodomain-like
SuperFamilySSF466894.16E-14505562IPR009057Homeodomain-like
SMARTSM007171.6E-6507560IPR001005SANT/Myb domain
CDDcd116601.39E-17509559No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MEVGDSHAAV VNKSEENDFE KKDSSNPVVY QLVRVEGDGT LVPATEDDVL QFEHFLHDEK  60
VDLPSIEDVG HVEEFFSNDC ILLKKSDLED GTSKLKTKEL HTQKSGADLE ENRLQSMDDS  120
LSPPSKCSVV HGQQPDKFLT EQGDNDIAQQ DNASTETTKS TVLNDSCNAE KDKADACSRP  180
VDDTSTEPSV SGVNSSVPDF SILRGEVRLD DLTIRELQEA FRATFGRQTT VKDKIWLKRR  240
ITMGLTNSCD VPSSGCVVKD YKIVGKDAKQ DMPNTGEIPK IGLQATSLVR DQIIYPGNEG  300
DSPSSYYHSE DQQGSSKRFK RVPIHNDEPQ VILAEQSTNK RTRKPTKRYI EELTDIETHD  360
STGKLSSPAK GTARDEVLLK PRVAHFHEAE SLGTTYPTRK DTLGGFSVHV PYVSRTRRGR  420
PRKDFISFVD KEPFLEHNGV QTAVEMTLAK EREEGNHVRK AYEVPLSVNS GRGHIEAVDR  480
KRIQNLQPNV YNAASKPKIK RGLTRKHHRA WTLCEVMKLV DGVARFGAGK WSEIRKLSFS  540
SYSYRTSVDL KDKWRNLIRA TQTQLPAQKD GACPRKINPS IIPIPPSILL RVKELNELQS  600
QGGGFAAPVK FSGQNSKVVQ EKGSGFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1416422RRGRPRK
2416423RRGRPRKD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.6680.0callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG528600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801371.10.0uncharacterized protein LOC112880841
RefseqXP_025801378.10.0uncharacterized protein LOC112880841
TrEMBLA0A3L6RW430.0A0A3L6RW43_PANMI; Uncharacterized protein
STRINGPavir.Aa00316.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69663341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.22e-85TRF-like 6