PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG526900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 296aa MW: 32562.6 Da PI: 6.9649 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.7 | 3.3e-51 | 10 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrF P+deelv++yL+ kv+++++ + + evd++++ePw+Lp +k +++ewyfFs rd+kyatg r+nratksgyWkatgkd Pavir.1NG526900.1.p 10 LPPGFRFYPSDEELVCHYLHSKVANERIAGAGGaMVEVDLHTHEPWELPDVAKLSTNEWYFFSFRDRKYATGLRTNRATKSGYWKATGKD 99 79*************************8776555***************87788999********************************* PP NAM 90 kevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++ ++++vg++ktLvfy+grap+g kt+Wvmhe+r+ Pavir.1NG526900.1.p 100 RVIHNPkaaGRAVVGMRKTLVFYRGRAPNGIKTSWVMHEFRM 141 ****987877888***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-60 | 7 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.712 | 10 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.3E-28 | 11 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MGLRDIELTL PPGFRFYPSD EELVCHYLHS KVANERIAGA GGAMVEVDLH THEPWELPDV 60 AKLSTNEWYF FSFRDRKYAT GLRTNRATKS GYWKATGKDR VIHNPKAAGR AVVGMRKTLV 120 FYRGRAPNGI KTSWVMHEFR MENPHTPPKE DWVLCRVFYK KKADTMDYAM DSDQDVAMPR 180 SADHPSYSPS FPALGSGHYH LPPPPPSDQH AGAGAGSLND FPAAMALLHH QHNSMFSFPA 240 QPHDGGDVVL AAPAAAGSRD GTGTGAGDQC GSGVLMDLAG LDEHYNYNYN SLMQM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-47 | 1 | 163 | 4 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-47 | 1 | 163 | 4 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-47 | 1 | 163 | 4 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-47 | 1 | 163 | 4 | 168 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-47 | 1 | 163 | 4 | 168 | NAC domain-containing protein 19 |
4dul_B | 2e-47 | 1 | 163 | 4 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.31599 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG526900.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK364002 | 1e-146 | AK364002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020L05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824302.1 | 0.0 | protein CUP-SHAPED COTYLEDON 3-like | ||||
Swissprot | Q9FLJ2 | 9e-61 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A2S3GUT5 | 0.0 | A0A2S3GUT5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa00144.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 1e-80 | NAC domain containing protein 74 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG526900.1.p |
Publications ? help Back to Top | |||
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