PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG521800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 371aa MW: 40805 Da PI: 4.5472 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.2 | 4.7e-19 | 116 | 165 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp + r++lg+f ++eeAa+a++a +++++g Pavir.1NG521800.1.p 116 QYRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTFNSPEEAARAYDAEARRIRG 165 69*******.**********94....35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 8.3E-32 | 116 | 174 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.3E-36 | 116 | 179 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.67 | 116 | 173 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.91E-31 | 116 | 175 | No hit | No description |
SuperFamily | SSF54171 | 9.81E-22 | 116 | 174 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-11 | 117 | 165 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 117 | 128 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 139 | 155 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MCGGAILANL TKQPGPRRLT ERDLWQEKKK PKRSAGGGRR WFLAEEDEDF EADFEDFQGD 60 SDESDLEFGE GEDDDVVEIK PFAAKRTSSK DGLSTMITAG YDGPAARSAK RKRKNQYRGI 120 RQRPWGKWAA EIRDPQKGVR VWLGTFNSPE EAARAYDAEA RRIRGKKAKV NFPDAPTVSQ 180 KRRSGPAAAK APKLSVEQKP TVKPAVNNLA NANASFYPPA DYTSNQQFVQ HANMPFHPAM 240 NSASPTEDPV MNLHSDQGSN SFDCSDLSWE NDTKTSDITS IAPISTIAEG DESAFVNSNL 300 NNSLVPSVMG NNAVDLTDGL TDLEPYMRFL LDDGASESID NLLNLDGSED VMSNMDLWSF 360 DDMPATGDFY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-19 | 115 | 173 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-19 | 116 | 173 | 5 | 63 | ATERF1 |
3gcc_A | 2e-19 | 116 | 173 | 5 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.973 | 0.0 | callus| leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG521800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816350.1 | 0.0 | ethylene-responsive transcription factor 1 | ||||
Swissprot | Q6K7E6 | 1e-166 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A3L6RNH8 | 0.0 | A0A3L6RNH8_PANMI; Ethylene-responsive transcription factor 1-like | ||||
STRING | Pavir.Aa00281.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 4e-37 | related to AP2 12 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG521800.1.p |