PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG508000.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 403aa MW: 40186.5 Da PI: 5.3942 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.2 | 5.4e-12 | 205 | 250 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Pavir.1NG508000.2.p 205 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 250 99***********************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.71E-17 | 198 | 259 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.39 | 200 | 249 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-16 | 202 | 259 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.96E-13 | 204 | 254 | No hit | No description |
Pfam | PF00010 | 2.6E-9 | 205 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-13 | 206 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MQPSGREMQG VGGGGQDDFF DQMLSTLPAA WSDLGSGKSH WELPAAGASE DAAFDESALL 60 ASRLRHHQIG GGGDKPVMLH LSDLHGLAAS GEDGGAAGFL PLPLFTDRAR EDMDAAFKSP 120 NAAGGDQALY NGFGAAGMHG AAAVPPQFGQ GGSMPAQSFG GGAASGGGGS APAGAPAAGA 180 SPGGGAAPPR QQRQRARRGQ ATDPHSIAER LRRERIAERM KALQELVPNA NKTDKASMLD 240 EIIDYVKFLQ LQVKVLSMSR LGGAAGVGPL VANMSSEGNG NGNGTSDSGD GDAANGGGNG 300 ENGGGSLKVT EQQVAKLMEE DMGTAMQYLQ GKGLCLMPIS LASAISSATS SSLLSRPSIG 360 SMGSARGGPA HEGGNPASPP LMNGAGGDDS RTVKDAGAGS KQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 209 | 214 | RLRRER |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.29705 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG508000.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809006.1 | 0.0 | transcription factor bHLH82-like | ||||
Swissprot | Q9ZUG9 | 4e-73 | BH066_ARATH; Transcription factor bHLH66 | ||||
TrEMBL | A0A2S3GUI2 | 0.0 | A0A2S3GUI2_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7FD95 | 0.0 | A0A2T7FD95_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa00205.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 9e-35 | LJRHL1-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG508000.2.p |
Publications ? help Back to Top | |||
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