PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG508000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 468aa    MW: 47671.2 Da    PI: 6.2449
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG508000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.6e-12270315555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Pavir.1NG508000.1.p 270 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 315
                          99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.89E-17263324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39265314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-16267324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.66E-13269319No hitNo description
PfamPF000103.2E-9270315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13271320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MQPSGREMQG VGGGGQDDFF DQMLSTLPAA WSDLGSGKSH WELPAAGASE DAAFDESALL  60
ASRLRHHQIG GGGDKPVMLH LSDLHGLAAS GEDGGAAGFL PLPLFTDRAR EDMDAAFKSP  120
NAAGGDQALY NGFGAAGMHG AAAVPPQFGQ VHQDVCTLNY ISNNSRFASA LMAQATGKAT  180
RISVLQFCWQ VCLVFFSWLI NWTEKTVSFI LVWSKGGSMP AQSFGGGAAS GGGGSAPAGA  240
PAAGASPGGG AAPPRQQRQR ARRGQATDPH SIAERLRRER IAERMKALQE LVPNANKTDK  300
ASMLDEIIDY VKFLQLQVKV LSMSRLGGAA GVGPLVANMS SEGNGNGNGT SDSGDGDAAN  360
GGGNGENGGG SLKVTEQQVA KLMEEDMGTA MQYLQGKGLC LMPISLASAI SSATSSSLLS  420
RPSIGSMGSA RGGPAHEGGN PASPPLMNGA GGDDSRTVKD AGAGSKQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1274279RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.297050.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG508000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809006.11e-111transcription factor bHLH82-like
TrEMBLA0A3L6EFW01e-177A0A3L6EFW0_MAIZE; Transcription factor bHLH69
STRINGORUFI06G05560.11e-117(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-34LJRHL1-like 1