PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG507000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 468aa    MW: 50663.5 Da    PI: 8.3375
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG507000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.51.5e-28103156155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl
  Pavir.1NG507000.1.p 103 KPRVVWSVELHQKFVAAVNQL-GIDKAVPKRILELMNVEKLTRENVASHLQKYRL 156
                          79*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011013.407129IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23002.8E-8258No hitNo description
SuperFamilySSF521721.13E-5239IPR011006CheY-like superfamily
PROSITE profilePS5129412.829100159IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.7E-30101161IPR009057Homeodomain-like
SuperFamilySSF466899.5E-20101160IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-25103156IPR006447Myb domain, plants
PfamPF002492.5E-7105155IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MKGITHGACD YLLKPVRLEE LRNIWQHVVR RKFSNRERAN VDGYEECNRL SNADFDNVHG  60
QTCGSPDQSG RPSKKRKEYH SEEEDEGKES NSQENDDSSG PKKPRVVWSV ELHQKFVAAV  120
NQLGIDKAVP KRILELMNVE KLTRENVASH LQKYRLYLKR LSAVASHQAS IVAALGSSDP  180
FMRMGAFEGL QSYQGFTSSA ALSSLSTKGL LTRNNPTSFG IQGMAASRPI QIATVNSTIS  240
HSICDTNKYQ LSLPGTSNRP GNLSQGLKAT SVGQVQLPQK WIQEETHDLS TIISGNGLVN  300
GVPGTLRSVT DSPLLQQDLV EHRHAKIVIQ PSSSANSEHL EGTTGVSSSL MDSHISQQSD  360
LLLSAFSASA VPMNGSFSGT DVARLGGTSS GGTNIRPSHD LRVARDKDVG DSSFGSVILL  420
PPDAAQNQKY LNFGGGSSVR HNTDGGNADS SLLDAKLAWS SLRFFYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-2499162164ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.95613e-60callus| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG507000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810721.10.0two-component response regulator ORR23-like isoform X2
SwissprotQ6K8X60.0ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLA0A2T7FD980.0A0A2T7FD98_9POAL; Two-component response regulator
STRINGPavir.J35630.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.19e-55response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]