PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG500000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 290aa    MW: 31963.3 Da    PI: 8.8503
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG500000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.81.4e-164894455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                          hn  E+rRR+riN+++  L++l+P++      K +Ka++L  A+eY+k+Lq
  Pavir.1NG500000.1.p 48 VHNLSEKRRRSRINEKMKALQTLVPNS-----SKTDKASMLDDAIEYLKQLQ 94
                         6*************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-2041104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-2042104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.0764493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.00E-164798No hitNo description
PfamPF000103.3E-144894IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-195099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MDAQQLDLFL RHQSMANICE SEDALGSSES EPARPARPRG KRSRAAEVHN LSEKRRRSRI  60
NEKMKALQTL VPNSSKTDKA SMLDDAIEYL KQLQLQVQML SMRNGLYLPP ANLSGVPEAL  120
APSEVCAMLN KSGVKASDSG VALLPVNQSS VAHHSFNPPN HDQRHNKLLV LQSIPTSSTT  180
IARFLQEPAQ ANLQSFQLAV HPEMIFKEDM MLKHRLTSVQ ETTSLPGHEV KLASQEACMV  240
NSGRFDRGSQ RKEVARDMMP KNTESVLFMP YLHSLQSGDA NGGPRAESS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG500000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804956.10.0transcription factor EC-like isoform X1
TrEMBLA0A2T7FDG70.0A0A2T7FDG7_9POAL; Uncharacterized protein
TrEMBLA0A2T8KY920.0A0A2T8KY92_9POAL; Uncharacterized protein
STRINGPavir.J11618.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.13e-34bHLH family protein