PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG492300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 346aa    MW: 36282.2 Da    PI: 7.0942
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG492300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.4e-13132183155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +rr+h ++Er+RR+++N+ ++ Lr+++P++   ++++ + a+i+  A++++k+L+
  Pavir.1NG492300.1.p 132 QRRNHIAVERNRRRQMNEYLAVLRSVMPPS---YAQRGDQASIVAGAINFVKELE 183
                          79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.11E-14130187No hitNo description
SuperFamilySSF474595.37E-17130200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.561131182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-14132195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-11132183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-10137188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MALEAVVFPK EHLACTGKVG VAAHSASLGC GFDIDDLEEK GGVVLQVEAA GALPLGAGAV  60
TAWDAALCPC SVAPSAGGEE CCWDVQRHLS VSPPPVPAVA AQGGRGKAVA SAARRRRRRP  120
KAVKNTEEME SQRRNHIAVE RNRRRQMNEY LAVLRSVMPP SYAQRGDQAS IVAGAINFVK  180
ELEQLLQSLE AQKRRAGCTE RTPPAPPFAG FFTFPQYSTG ATGAVGASDS SDCSAGGDQG  240
GGGCAGARRG VADIEVAVAD SHANVKVLAP RRPRQLLRMV VALQCLGLTV LHLNVTTTAD  300
HLAFYSFSLK MEDECRLSSV DNIAAAVNEI VATVSDEVII SQLAE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113118RRRRRR
2133143RNHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG492300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0605120.0BT060512.1 Zea mays full-length cDNA clone ZM_BFb0009D23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828341.10.0transcription factor bHLH94-like
TrEMBLA0A3L6RUL50.0A0A3L6RUL5_PANMI; Transcription factor bHLH94-like
STRINGPavir.Aa00538.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104622843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.13e-48bHLH family protein