PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG487300.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 558aa    MW: 59905 Da    PI: 4.7844
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG487300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.3e-30309368159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  Pavir.1NG487300.3.p 309 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILVTTYEGTHNHP 368
                          58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-31294370IPR003657WRKY domain
SuperFamilySSF1182902.88E-27302370IPR003657WRKY domain
PROSITE profilePS5081128.529304370IPR003657WRKY domain
SMARTSM007741.4E-37309369IPR003657WRKY domain
PfamPF031061.0E-26310368IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MPSKKKRAAI DLSLERERRE EDRRDGDRRD KDGRVDKEEE QFKEQKEAPK EETGGEEKVV  60
EVVVDQGGDG TKEEIKYRTQ QGEEMEEDKQ SEEDGSGDDE SDGAGGIRAD DDKVVAVEDS  120
GDGDGDHTNS MVQDEVSAMQ EEMEKMKEEN RKLRRVVDRT VRDYYELQMK LAAYQQQPAA  180
DEPKEPEVFL TLGATAAAAG FPEPKRKEQA ARRPSVGSDY TDDGKEDLGL SLSLRASSSY  240
EEEKLQEAVR YLDGADGKAK GYALLESSKQ LGSPAAGDLA AAGITSQSVN PANRKTRVSV  300
RVRCQGPTMN DGCQWRKYGQ KVAKGNPCPR AYYRCTVAPG CPVRKQVQRC LEDMSILVTT  360
YEGTHNHPLP VGATAMASTT SAAATFMLLS STSSSSSISE AAGGGSSSAP PYLSPFLLNS  420
TSHHSFASPL LSTPSSMPSV ASGMNLFGHS SMLTQHQAPD LKYPWSSDPS RGSSSGGLAG  480
SKRPFWSSTG GDDKAAATLP DNVSAVMSDP SKFSVAIAAE INSFMGKDGQ VMSSKDGESS  540
SSKSSNKWGV VESLPPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-213093701777Probable WRKY transcription factor 4
2lex_A2e-213093701777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG487300.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827272.10.0probable WRKY transcription factor 9
TrEMBLA0A2S3GTK90.0A0A2S3GTK9_9POAL; Uncharacterized protein
STRINGPavir.Aa00351.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.14e-50WRKY DNA-binding protein 9