PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG478700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 565aa    MW: 60211 Da    PI: 4.6949
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG478700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.3e-30316375159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  Pavir.1NG478700.1.p 316 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILVTTYEGTHNHP 375
                          58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-31301377IPR003657WRKY domain
SuperFamilySSF1182902.88E-27309377IPR003657WRKY domain
PROSITE profilePS5081128.529311377IPR003657WRKY domain
SMARTSM007741.4E-37316376IPR003657WRKY domain
PfamPF031061.0E-26317375IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MSSKKKRAAI DLSREAERRE EDDRSDGDRR DKDGRVDKEE EQFKEQKEAP KEETGGEEKK  60
VVEVVVDQGG DGTKEEIKYR TQQGEEMEED KQSEEDGSGD DESDGAGTRA DDDKLVAVED  120
SGDGDGDHTT SMVQDEVSAM QEEMEKMKEE NRMLRRVVDR TVRDYYELQM KLAAYQQQPA  180
DEPKEPEVFL TLGAAAAAVG GFPEPKRKEQ AARRPSVGSD DTDNGKEDDD LGLSLSLRAS  240
SSYEEEKLQE AVRDLDGASE AGADGKAKGY ALLESSKLGA PAAGDLAAAG ITSQSVNPAN  300
RKTRVSVRVR CQGPTMNDGC QWRKYGQKVA KGNPCPRAYY RCTVAPGCPV RKQVQRCLED  360
MSILVTTYEG THNHPLPVGA TAMASTTSAA ATFMPLSSTS SSSSISEAAT GGGSAAPPYH  420
SPYLLNSSTS HHSSAASLLS TPPSSMPSAA SGMNLFGHSS MLAQHQAPHL KYPWSSDPSH  480
GSGGGLAGSK RPFWSTGGGD DRAATLPDNV SAVMSDPSKF SVAIDAAINS FMGKDGQVMS  540
SKDGESSSSK SSNKWGVVES LPPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-213163771777Probable WRKY transcription factor 4
2lex_A3e-213163771777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG478700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827272.10.0probable WRKY transcription factor 9
TrEMBLA0A2S3GTK90.0A0A2S3GTK9_9POAL; Uncharacterized protein
STRINGPavir.J01311.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80223446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.12e-50WRKY DNA-binding protein 9