PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1NG477100.3.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GeBP

Protein Properties

Length: 305aa MW: 32998.4 Da PI: 10.118

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1NG477100.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	37.9	4.9e-12	120	187	4	70
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvk 70 ++ ws+ De +lL + + f++++g p d+ ++++ + +sis ++ + + K++rLK Kf++ Pavir.1NG477100.3.p 120 KKYWSDADEFTLLAAAVAFRERNGRAPRLpDMAELFDSICDSISPDIDQFMVYYKMKRLKSKFQHSNG 187 678********************88877*******************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.5E-10	120	186	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MMSSGRPSAS AMDADARPSP PRSKKGPSLK SDSDWSPNPS PGGSPSEHKR RRRTSAESAA 60 LALTAVAARA SAASSDAGRG AVRRSLRSRR RAARVDGDDG GIQMLGDAAA RVGGGRGGVK 120 KYWSDADEFT LLAAAVAFRE RNGRAPRLPD MAELFDSICD SISPDIDQFM VYYKMKRLKS 180 KFQHSNGPSD RRLRNLCSIL WGVGVVPSSE DDSDAAERRG VPDAAAMMPV VTEVLGEYWK 240 INERVMAPVP LEKGLSLLGK KEGRFLETKW RQQLDEEMQS QMRQHDLAKE VCGLLTDAIK 300 GLGP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.20969	0.0	callus\| leaf\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1NG477100.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825361.1	1e-176	uncharacterized protein LOC112900770
Refseq	XP_025825369.1	1e-176	uncharacterized protein LOC112900770
Refseq	XP_025825375.1	1e-176	uncharacterized protein LOC112900770
TrEMBL	A0A2T8KXX4	1e-174	A0A2T8KXX4_9POAL; Uncharacterized protein
STRING	Pavir.J28432.1.p	0.0	(Panicum virgatum)

Link Out ? help Back to Top
Phytozome	Pavir.1NG477100.3.p