PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.1NG475300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 357aa MW: 38486.1 Da PI: 9.7618 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 47.4 | 4.3e-15 | 276 | 329 | 5 | 57 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL.kkeleelkkeva 57 +r+rr++kNRe+A rsRqRK+a++ eLe +v++L++ N++L kk++e+l+ke Pavir.1NG475300.1.p 276 RRQRRMIKNRESAARSRQRKQAYMMELEAEVAKLKELNEELqKKQIEMLEKEKN 329 79***************************************4457999998865 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 9.4E-15 | 270 | 331 | No hit | No description |
SMART | SM00338 | 1.6E-14 | 272 | 337 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.978 | 274 | 319 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.18E-10 | 276 | 328 | No hit | No description |
CDD | cd14707 | 9.06E-24 | 276 | 328 | No hit | No description |
Pfam | PF00170 | 2.9E-13 | 276 | 330 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 279 | 294 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 357 aa Download sequence Send to blast |
MEFPRGSGRR PQQQQQPEPE HLQPMTPMPL ARQGSVYSLT FDEFQSALGG AGKDFGSMNM 60 DELLRSIWTA EETHAVAAAN ASAASAAAAD LAARAASIQR QGSLTLPRTL SQKTVDEVWR 120 DIMCFGGPSA AQAEAPPPPA QRQQTLGEIT LEEFLVRAGV VREDMTAPPP VPPLAVAAPP 180 PPPPPQPPML FPHGNVFAPL APPPLSFGNG LVSGAVGQAG GAAPSAVSPV RPVTSSGFGK 240 MEGGDLSSLS PSPVPYVFNG GLRGRKPPAM EKVVERRQRR MIKNRESAAR SRQRKQAYMM 300 ELEAEVAKLK ELNEELQKKQ IEMLEKEKNE VLERMSRQVE PTAKRICLRR TLTGPW* |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in leaves. {ECO:0000269|PubMed:18931143}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that mediates abscisic acid (ABA) signaling (PubMed:18931143, PubMed:19947981, PubMed:27424498, PubMed:27325665). Can regulate the expression of a wide spectrum of stress-related genes in response to abiotic stresses through an ABA-dependent regulation pathway. Confers ABA-dependent drought and salinity tolerance (PubMed:18931143, PubMed:27325665). Binds specifically to the ABA-responsive elements (ABRE) in the promoter of target genes to mediate stress-responsive ABA signaling (PubMed:27325665, PubMed:27424498). {ECO:0000269|PubMed:18931143, ECO:0000269|PubMed:19947981, ECO:0000269|PubMed:27325665, ECO:0000269|PubMed:27424498}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.1NG475300.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) (PubMed:18315698, PubMed:18931143). Induced by drought, salt and osmotic stresses (PubMed:18931143). {ECO:0000269|PubMed:18315698, ECO:0000269|PubMed:18931143}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025799480.1 | 0.0 | bZIP transcription factor 23 | ||||
Swissprot | Q6Z312 | 1e-161 | BZP23_ORYSJ; bZIP transcription factor 23 | ||||
TrEMBL | A0A2S3GTZ2 | 0.0 | A0A2S3GTZ2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J00256.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP706 | 38 | 147 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19290.2 | 5e-40 | ABRE binding factor 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.1NG475300.1.p |