PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG468500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 340aa    MW: 35377.2 Da    PI: 7.6988
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG468500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.4e-13127178155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +rr+h ++Er+RR+++N+ ++ Lr+++P++   ++++ + a+i+  A++++k+L+
  Pavir.1NG468500.1.p 127 QRRNHIAVERNRRRQMNEYLAVLRSVMPPS---YAQRGDQASIVAGAINFVKELE 178
                          79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.2E-13125182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.13E-14125182No hitNo description
SuperFamilySSF474595.23E-17125199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.561126177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-11127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-10132183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.505259336IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MALEAVVFPK EHLACAAKAG SASLGCGFDI DDLEEKGGVV LQVEAAGALP LGAGAATAWD  60
AALCPCSVAP GAVEECWDAP RHLSVSPPPV PAVAAQGGRG KAAASGAARR RRRRPKAVKN  120
TEEMESQRRN HIAVERNRRR QMNEYLAVLR SVMPPSYAQR GDQASIVAGA INFVKELEQL  180
LQSLEARKRR AGCTEPPPPP FAGFFTFPQY STGATGAAGA SDSSGSAAGD QSGGGGGGCA  240
GARRGVADIE VAVAESHANV KVLAPRRPRQ LLRMVVALQC LGLTVLHLNV TTTTDHLAFY  300
SFSLKMEDEC RLSSVDDIAA AVNEIVAKVS DEVISQLAA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108113RRRRRR
2128138RNHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG468500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0381060.0BT038106.1 Zea mays full-length cDNA clone ZM_BFb0212B15 mRNA, complete cds.
GenBankKJ7268730.0KJ726873.1 Zea mays clone pUT3414 bHLH transcription factor (bHLH161) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828341.10.0transcription factor bHLH94-like
TrEMBLA0A3L6RUL50.0A0A3L6RUL5_PANMI; Transcription factor bHLH94-like
STRINGPavir.Ia03109.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104622843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.12e-48bHLH family protein