PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG468000.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 343aa    MW: 36966.6 Da    PI: 8.1534
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG468000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.77.5e-17108157255
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r +h++ E+rRR +iN+++e LrellP+     ++K +Ka+ L +++eYI+ Lq
  Pavir.1NG468000.2.p 108 RSKHSATEQRRRTKINDRLEILRELLPHG----DQKRDKASFLLEVIEYIRFLQ 157
                          889*************************7....7*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-18104168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-22105172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.66106156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-14108157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.01E-16108161No hitNo description
SMARTSM003533.8E-12112162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MAPSGLEADS AEHLLPGGVG TFSIRQAPST AQPRGQPAGH GVVATGAFAP VLHGSRTEAT  60
HGAESGARAH SGPASMWQDS GADQRSRATR GEGRSSGSSG DQGPSTPRSK HSATEQRRRT  120
KINDRLEILR ELLPHGDQKR DKASFLLEVI EYIRFLQEKV QKYESAHPQK NHEDSSMPWN  180
ITQVQGGSSA PTQAMNKEQY CSTKTTVAPT LFSTHSAGET SIDEISSQKA TSTPQNWADD  240
STPSKQPPWL SMSTSDSGNK TLSKKEKQTL HEDTRSLSNA YSQGLLNRLT QALKSSGVDP  300
SQASISVEIN MDKRATEPSN THGNLKDNEC EETIHVTKKL RC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.325560.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG468000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432571e-122AC243257.1 Panicum virgatum clone PV_ABa103-H05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798288.10.0transcription factor BIM2-like isoform X2
TrEMBLA0A2S3GTA60.0A0A2S3GTA6_9POAL; Uncharacterized protein
STRINGPavir.Aa00700.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.15e-39BES1-interacting Myc-like protein 2