PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG468000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 356aa MW: 38538.4 Da PI: 8.8718 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 52.6 | 7.9e-17 | 108 | 157 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR +iN+++e LrellP+ ++K +Ka+ L +++eYI+ Lq Pavir.1NG468000.1.p 108 RSKHSATEQRRRTKINDRLEILRELLPHG----DQKRDKASFLLEVIEYIRFLQ 157 889*************************7....7*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.06E-18 | 104 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.1E-22 | 105 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.66 | 106 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.19E-16 | 108 | 161 | No hit | No description |
Pfam | PF00010 | 2.7E-14 | 108 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.8E-12 | 112 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MAPSGLEADS AEHLLPGGVG TFSIRQAPST AQPRGQPAGH GVVATGAFAP VLHGSRTEAT 60 HGAESGARAH SGPASMWQDS GADQRSRATR GEGRSSGSSG DQGPSTPRSK HSATEQRRRT 120 KINDRLEILR ELLPHGDQKR DKASFLLEVI EYIRFLQEKV QKYESAHPQK NHEDSSMPWA 180 KLYYRSCWKN TGNITQVQGG SSAPTQAMNK EQYCSTKTTV APTLFSTHSA GETSIDEISS 240 QKATSTPQNW ADDSTPSKQP PWLSMSTSDS GNKTLSKKEK QTLHEDTRSL SNAYSQGLLN 300 RLTQALKSSG VDPSQASISV EINMDKRATE PSNTHGNLKD NECEETIHVT KKLRC* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.32556 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG468000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798281.1 | 0.0 | transcription factor BIM2-like isoform X1 | ||||
TrEMBL | A0A2S3GTA6 | 0.0 | A0A2S3GTA6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa00700.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP762 | 37 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 1e-39 | BES1-interacting Myc-like protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG468000.1.p |