PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG463100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CO-like
Protein Properties Length: 408aa    MW: 44729 Da    PI: 4.994
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG463100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.26.1e-07445540
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                          C+ +++++  ++C+++   lC +C  + H+       Ht++
  Pavir.1NG463100.1.p  4 LCDFCGKQRSMIYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
                         7*****************************657888889876 PP
2zf-B_box17.11.1e-054788540
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                          C+++ ++++   C + +  lC++C  ++H        H+++
  Pavir.1NG463100.1.p 47 LCDRCCSQPAAVRCIEENASLCQNCDWNGHDAasgatgHKRQ 88
                         7*****************************447778888876 PP
3CCT62.71.1e-21350393144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          R++al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrF k+ 
  Pavir.1NG463100.1.p 350 RDNALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFIKAG 393
                          899*************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.7E-10147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.196147IPR000315B-box-type zinc finger
CDDcd000214.48E-6447No hitNo description
PROSITE profilePS501198.7314390IPR000315B-box-type zinc finger
CDDcd000211.68E-44790No hitNo description
SMARTSM003360.884890IPR000315B-box-type zinc finger
PfamPF062031.2E-16350392IPR010402CCT domain
PROSITE profilePS5101715.309350392IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MAALCDFCGK QRSMIYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CCSQPAAVRC  60
IEENASLCQN CDWNGHDAAS GATGHKRQAI NCYSGCPSSA ELSRIWSFVM DIPTVAAELN  120
CEDGMSMMTI DDGDVTNHCG ASDDKRLLEI ASTTLMSDPP TSDKLKPLIG SSSGDGFNVL  180
PLAIDQPAGQ VSMMQKVPYA ADDDKFNDGS MYEDLCVDDT DLTFENYEEL FGTSHIQTEQ  240
LFDDAGIDSY FEMKEMPPFD SNEEPKYMQL ECSNVVSADS AMSNPGARAD SSLCIPVRQV  300
RSSRSQSFSG LTGESSAGDH QDCGVSPMLL MGEPPWHPPG PEVSVAGGSR DNALTRYKEK  360
KKRRKFDKKI RYASRKARAD VRKRVKGRFI KAGEAYDYDP LSQTRSY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1359363KKKRR
2359364KKKRRK
3360364KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.170671e-102callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG463100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827948.10.0zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE51e-123COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A3L6QCT50.0A0A3L6QCT5_PANMI; Zinc finger protein CONSTANS-LIKE 9
STRINGSi017374m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.43e-97CONSTANS-like 9