PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG455000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 293aa MW: 29980.6 Da PI: 6.5262 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.7 | 5.6e-10 | 208 | 249 | 9 | 55 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++RR+ri +++ +L+el+P+ +K++ +++LekA+ Y+k Lq Pavir.1NG455000.1.p 208 AKNRRERISERLRTLQELVPNG-----TKVDLVTMLEKAISYVKFLQ 249 69******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.345 | 199 | 248 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.3E-12 | 201 | 256 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.22E-12 | 201 | 253 | No hit | No description |
SuperFamily | SSF47459 | 1.57E-13 | 201 | 259 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.1E-12 | 205 | 254 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.8E-7 | 208 | 249 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048766 | Biological Process | root hair initiation | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MALVREHGGY AGGFDALGYG HDALLGFDDA AAALFGGGGS HAGAAAAGCE ADGGNVWLGA 60 RASTVLAFDR ATAAAAVVSA EEDEERDAWI DAVDQMSYGD AAAAEARAPT VSVGFDAATG 120 CFTLTERAAS SGGAGRTFGL LFPTTAAAAA ASPERAAPVR ASQKRTYVGV ESPAAVSPKK 180 HCGAGRKATS KAKSAPTVPT KDPQSLAAKN RRERISERLR TLQELVPNGT KVDLVTMLEK 240 AISYVKFLQL QVKVLATDEF WPAQGGKAPE ISQVREALDA ILSSASQRGQ LS* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG455000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109662 | 1e-109 | AK109662.1 Oryza sativa Japonica Group cDNA clone:002-143-H06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822733.1 | 1e-151 | putative transcription factor bHLH086 | ||||
Swissprot | Q9C707 | 1e-54 | BH083_ARATH; Transcription factor bHLH83 | ||||
TrEMBL | A0A2T7FB56 | 1e-160 | A0A2T7FB56_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa00611.1.p | 1e-164 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1412 | 38 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66470.1 | 1e-54 | ROOT HAIR DEFECTIVE6 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG455000.1.p |