PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG450000.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 349aa    MW: 36131.8 Da    PI: 6.274
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG450000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.1e-08159206455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR+ri +++  L+el+P +    s    Ka +L + ++Y++sLq
  Pavir.1NG450000.2.p 159 SHSLAERVRRERISERMRYLQELVPGC----SMVTGKAGMLDEIINYVQSLQ 206
                          8*************************9....78899***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-15153220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.44E-10153210No hitNo description
PROSITE profilePS5088815.015155205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-16155217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-5159206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-8161211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MARCQGTTVE SLCQGLVDLD DDKFGAMCSA FGYLQEWPDL GAMCGASLGA TPGAVAPGDG  60
NDDSCSGSGS GGGGGFRKRR REACLDAKGD GNDMSKRPRG KQQQQLCGLG EIAASGKAKQ  120
ERPKAGAKKK AEAASTAAAA GQKTDYIHVR ARRGQATDSH SLAERVRRER ISERMRYLQE  180
LVPGCSMVTG KAGMLDEIIN YVQSLQKQVE FLSMKIAASN PVVSFDIVED LFGRQLKQAC  240
SPAALPAVAL PAGQLEPTCL QMSPLQQVHP SAAGGSNGFG LDMVVNNLYP PAAASCPVSA  300
ASPVMAAAGP SIEPCLNVNG AAAAAAWDIG SQNLFGGFDA QFQSVESE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17680RKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.11180.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG450000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0667150.0BT066715.1 Zea mays full-length cDNA clone ZM_BFb0058C16 mRNA, complete cds.
GenBankKJ7268610.0KJ726861.1 Zea mays clone pUT3402 bHLH transcription factor (bHLH29) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813679.10.0transcription factor bHLH49-like
TrEMBLA0A2T7FB250.0A0A2T7FB25_9POAL; Uncharacterized protein
TrEMBLA0A2T7FB270.0A0A2T7FB27_9POAL; Uncharacterized protein
STRINGPavir.Aa00761.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.12e-35cryptochrome-interacting basic-helix-loop-helix 1