PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG448000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 321aa    MW: 34665.7 Da    PI: 6.2502
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG448000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_123.71e-071872361463
                          HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  14 ReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          R + +rsR RK+++i+eLe+ v++L++   +L+ ++ +l ++  +l +e+
  Pavir.1NG448000.1.p 187 RRSGQRSRVRKLQYIAELERTVDSLQNMGADLAVRVASLFQLHNSLSMEN 236
                          67889******************************999999999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd147034.64E-17186230No hitNo description
Gene3DG3DSA:1.20.5.1702.1E-5187245No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MSRSPHLPPR CPPLGPQITR RDDSLFTQSC RFPSGDPFFG EPPCWLDDLL ADSGKVPNLP  60
PLRRACSDSD AILDALSTFQ SPIHPIEEGD LSPGGEAEDL LDAAEGGESG SVVEASCVYG  120
PNSPRQKSRL TTSESSMVNA VLENVPSNPL QYLTIDASSG LNGNVANGTA DATDAFGHPD  180
QDKTFKRRSG QRSRVRKLQY IAELERTVDS LQNMGADLAV RVASLFQLHN SLSMENKQLR  240
IQISTLQHAK LIKDGQTQAL KNEAERLKQV SACHRRSRSV TSCYNLSPYG DASAVNWQMP  300
DMAKLSLNGS SVSPRGGYGL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186192RRSGQRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.50890.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG448000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815126.10.0basic leucine zipper 2
TrEMBLA0A2S3GPT30.0A0A2S3GPT3_9POAL; Uncharacterized protein
TrEMBLA0A2T7F7D50.0A0A2T7F7D5_9POAL; Uncharacterized protein
STRINGPavir.Aa01750.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81372631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42380.22e-17bZIP family protein