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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pavir.1NG441300.2.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
bHLH |
| Protein Properties |
Length: 475aa MW: 53204.6 Da PI: 6.0083 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.1NG441300.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 35.5 | 1.8e-11 | 274 | 320 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+a+ + Er RR+++N ++ Lr+l P++ +K++ a+i+ A+eYI++L
Pavir.1NG441300.2.p 274 KANFATERERREQLNVKYGALRSLFPNP-----TKNDRASIVGDAIEYINEL 320
68899***********************.....9***************998 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 475 aa
Download sequence Send
to blast |
MIAGGGYFNG SHDHILMEGS MIHDPSQSSI YDNTNEEQQN FRLAPFSIED HSNPANLTSE 60
PARVIDHIKN QLGIDMEQDH SGHMIQEVAP VETANLVPSI YGVHNHILRS QIREGPHNIT 120
VEQQILDYDA ASYQSGTYAT AHDLLNSLQT QKCSLNPEFP STEHIFGDPA QNMVNHLNMN 180
NDLPGIAIHE SGMMFSDSTL PLGYQATQSH MLKDLYHSLP QNYGLFTSDD ERDGMIRVPG 240
VSGNIFQEID ERQFDSPILG SRRRKGGFGK GKGKANFATE RERREQLNVK YGALRSLFPN 300
PTKNDRASIV GDAIEYINEL NRTVKELKIL VEKKRNSTDR RKMLKLDDEA ADDGESSSMQ 360
LLSDDQNNQM NGAIRSSWIQ RRSKECDVDV RIVDDEINIK FTQKKRANSL LSAAKVLEEF 420
RLDLIHVVAG IVGDHHIFMF NTKIPKGSSV YACAVAKKLL EAVEMKNQAL NIFN*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in developing anthers from stage 8 to stage 10 (PubMed:23519457). Expressed in developing anthers from stage 7 to stage 11 with a peak at stages 8 and 9. Highly expressed in the tapetum (PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU962797 | 0.0 | EU962797.1 Zea mays clone 245608 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds. |
