PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG437700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 360aa    MW: 38270.9 Da    PI: 8.5354
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG437700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1023.8e-32177230255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Pavir.1NG437700.1.p 177 PRMRWTTSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 230
                          9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.51E-15175231IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-28175230IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-23177231IPR006447Myb domain, plants
PfamPF002491.9E-7178229IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MELFPAHPDL QLQISPPPAT KPMELGFWKR ALDAASPAAT TAAAAAAATA TPAPSLSFTS  60
SSSAPTPAVG FHAEAGAHHH HQVPGSHLGL PFLHHTQPIL PEGGGGGIRD LASMRPIRGI  120
PVYSTTQPLP FLQSHPHHHH HPHCYDAIGM GYAGGPRSPK AALRLAGAPA KRGARAPRMR  180
WTTSLHARFV HAVELLGGHE RATPKSVLEL MDVKDLTLAH VKSHLQMYRT IKTTDHKPAS  240
ASSYGQATAK TIIDIPDDNL FEVTNTTSGS ESSAQQSNPD GNEHGSSMYA LWSNSSISSR  300
GAWFHDKSID AAPGDIKSFE DVQSGRLDDV SDLNSSPFQV AGIFGRSKKP NQDFTLGRI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-16178232458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-16178232458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-16178232357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-16178232357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-16178232357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-16178232357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-16178232458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-16178232458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-16178232458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-16178232458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-16178232458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-16178232458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG437700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0369111e-112BT036911.1 Zea mays full-length cDNA clone ZM_BFb0147F05 mRNA, complete cds.
GenBankKJ7268291e-112KJ726829.1 Zea mays clone pUT3369 G2-like transcription factor (GLK47) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811921.10.0probable transcription factor KAN2 isoform X1
TrEMBLA0A3L6RTR80.0A0A3L6RTR8_PANMI; Putative transcription factor KAN2 isoform X1
STRINGPavir.Aa01011.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94383445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.14e-37G2-like family protein