PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG434400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 356aa    MW: 37596.4 Da    PI: 6.4317
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG434400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.13.6e-1496147155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  Pavir.1NG434400.1.p  96 QRMTHIAVERNRRRQMNEYLAVLRSLMPEP---YVQRGDQASIVGGAIEFVKELE 147
                          79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-1787160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.35E-1494151No hitNo description
PROSITE profilePS5088815.30195146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-1496160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-1196147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-11101152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MSALVDALCA PTGDAAALIY DTFNAASFLF DGPAAAALYD GAGIVECPPP AQQQQQQQAA  60
EAAGETQAAT SSAPTRVRKR RRRARSCKSR EETETQRMTH IAVERNRRRQ MNEYLAVLRS  120
LMPEPYVQRG DQASIVGGAI EFVKELEQQL QCLEAQKRKL LVHQHKAAKP DATPMHHSAS  180
SSSTKAPAGT TACVETAAAT AVAATTSNCS SSVTEDAADH APPPPFAQFF TYPQYVWCHS  240
PRDPASSAAA AAAEDGGGRP GVADIEVTLV ETHASLRVMT PRRPGQLLGL VAGLQALRLG  300
VLHLSVTTLE SLVLYSISVK VEEGCGLATV EDIAAAAHHV LCLIDAAEPT EQGPR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17781RKRRR
27784RKRRRRAR
396107RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.158900.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG434400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0350321e-114BT035032.1 Zea mays full-length cDNA clone ZM_BFb0033F17 mRNA, complete cds.
GenBankBT0386551e-114BT038655.1 Zea mays full-length cDNA clone ZM_BFb0304G04 mRNA, complete cds.
GenBankKJ7268891e-114KJ726889.1 Zea mays clone pUT3432 bHLH transcription factor (bHLH53) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800848.10.0transcription factor bHLH94-like
SwissprotQ9C7T42e-68BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2S3GS590.0A0A2S3GS59_9POAL; Uncharacterized protein
TrEMBLA0A3L6QDM10.0A0A3L6QDM1_PANMI; Transcription factor bHLH94
STRINGPavir.Ab02502.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.13e-40beta HLH protein 71
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]