PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG427500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 467aa    MW: 49467.1 Da    PI: 8.1768
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG427500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-154993147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         r +WT++E+ ++++a +++G   W++I +++g ++t+ q++s+ qk+
  Pavir.1NG427500.1.p 49 REKWTEDEHRRFLEALQLHGRA-WRRIQERIG-TKTAVQIRSHAQKF 93
                         789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-154397IPR009057Homeodomain-like
PROSITE profilePS5129419.2824498IPR017930Myb domain
TIGRFAMsTIGR015576.7E-164796IPR006447Myb domain, plants
SMARTSM007175.7E-124896IPR001005SANT/Myb domain
PfamPF002491.5E-134992IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-94989IPR009057Homeodomain-like
CDDcd001672.17E-95194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MLCLEEHQME TDEGTVDHRK DPLDTGDMDL SGEERVPKAR KPYTITKQRE KWTEDEHRRF  60
LEALQLHGRA WRRIQERIGT KTAVQIRSHA QKFFTKVVRE SSGSNAAAGA APAIQIPPPR  120
PKRKPAHPYP RKVDGAAKKH VPALWQLEKP PLRTHSLRDQ DDGSPTSVLT TARTVLRAEE  180
LGSVFANSSS GSRSPAQSAA GSEEHGNGGD SPASSVGGED GGVSPSAVTA ELATRTANAK  240
VFGDAKEVSG VGTDAPVFKL FGKKVVVKDS YGHPQSGIDL KIGASPAIVA AGGSSWNPWP  300
GTVQQLMCFV PQPDGFAAQS VVPWLAYNGG LPCALFYPQA APSAQHQQQL HHHQTSEPLD  360
HKRTRREGSL TGSNTASSAV PAASAAAQNS DAAESHGPGQ ENTGESDAVP PAAAAVPVPR  420
LARCASSASF SRRGFVPYKR CAAESEAPRP VAAGEEADGE LTRLCL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.176990.0callus| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG427500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814514.10.0protein REVEILLE 1-like
TrEMBLA0A2S3GS630.0A0A2S3GS63_9POAL; Uncharacterized protein
STRINGPavir.Aa00960.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.42e-33MYB_related family protein