PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG422000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GRF | ||||||||
Protein Properties | Length: 240aa MW: 24579.8 Da PI: 10.2304 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 80.8 | 1.2e-25 | 137 | 181 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr rsrk++e+ Pavir.1NG422000.1.p 137 EPEPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPVEA 181 69****************************************985 PP | |||||||
2 | QLQ | 53.2 | 9.2e-19 | 71 | 107 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 sa+T +Q q+L++Q+l+y+y+aa++PvP +L+++i+k Pavir.1NG422000.1.p 71 SALTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIWK 107 799*********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 6.5E-6 | 71 | 107 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.225 | 72 | 107 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 5.7E-11 | 72 | 106 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.701 | 137 | 181 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.5E-21 | 138 | 180 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MADDKETDPP QPPAKLPRLS GADTSGGEVT MAASSPLVLG LGLGLGAGGG GGERDAEAAS 60 AASMAAAKRA SALTFMQQQE LEHQVLIYRY FAAGAPVPVH LVLPIWKSVA ASSFGPQRFP 120 SLMGLGSLCF DYRSSMEPEP GRCRRTDGKK WRCSRDVVPG HKYCERHVHR GRGRSRKPVE 180 AASAAAPTPT AAAAAVSSTS SRGGAPVRHH GGAGAAPHAH GLGFSPTSIL LAPSAARAT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG422000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727857 | 0.0 | KJ727857.1 Zea mays clone pUT5948 GRF transcription factor (GRF9) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004955149.1 | 1e-119 | growth-regulating factor 10 | ||||
Swissprot | Q6EPP9 | 2e-97 | GRF10_ORYSJ; Growth-regulating factor 10 | ||||
TrEMBL | K3YVF6 | 1e-118 | K3YVF6_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J06517.1.p | 1e-170 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6221 | 30 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36400.1 | 6e-36 | growth-regulating factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG422000.1.p |
Publications ? help Back to Top | |||
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