PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG419000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Nin-like | ||||||||
Protein Properties | Length: 216aa MW: 25293.7 Da PI: 6.7917 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 84.7 | 8.6e-27 | 93 | 143 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++ +++e +s+y s+pik+AA+eL+v+lTvLK++CR++GI+RWPhRk+ksl Pavir.1NG419000.1.p 93 KQGLTFELVSRYLSMPIKQAARELNVGLTVLKKRCRELGIPRWPHRKVKSL 143 6789*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.78 | 80 | 164 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.6E-21 | 96 | 143 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MEELRFYEKG YRYYHGLKLH EDEGYFQFQD FSADYLLGEE THLCAISFPE SSFSQEELGC 60 LSEVDFASFW ALVEEEDARR KSDEGPRSGP GKKQGLTFEL VSRYLSMPIK QAARELNVGL 120 TVLKKRCREL GIPRWPHRKV KSLQTLIDNV QELGRPNAQE DGHQTRSLVE RLQRTKKLIE 180 ERPEVMLDEE TKELRQACFK ETFKRRRLLG HGTYW* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 203 | 207 | KRRRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG419000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822796.1 | 1e-129 | protein RKD1 | ||||
Swissprot | Q9M9U9 | 2e-37 | RKD1_ARATH; Protein RKD1 | ||||
TrEMBL | A0A2S3GTB4 | 1e-128 | A0A2S3GTB4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa00708.1.p | 1e-155 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4590 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 6e-40 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG419000.1.p |