PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG406100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 293aa MW: 32883.4 Da PI: 7.3658 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 101.5 | 1.1e-31 | 58 | 197 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkk..kvegkkleleev.ikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 lp+G++F+P+d+el+++ L+k kv k++++ + i++vd +++++P++Lp vk++ + +fF+++ k+y+tg++k+r+++ Pavir.1NG406100.1.p 58 LPKGVKFDPSDQELLWHLLAKigKVGVKPHPFIDEfIPTVDsnegLCYTHPQKLP-GVKQDGSVSHFFHRTFKAYTTGTKKRRKINtdel 146 799************8888763356666666544338887766779*********.677888899******************7544566 PP NAM 80 .sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+k+v+ +g++ g+kk++v y + + k ekt+Wvmh+y++ Pavir.1NG406100.1.p 147 gEVRWNKTGKTKPVVI-GGTHLGCKKIMVMYasNVKGGKQEKTNWVMHQYHV 197 6899************.999***********6544667778*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-35 | 43 | 216 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.517 | 58 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.6E-14 | 59 | 197 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MTGTSWLIDC KRMASKIKNA SAPTHHTTHT WKSNPTKECP KCNYIMDNSD VVDEWPGLPK 60 GVKFDPSDQE LLWHLLAKIG KVGVKPHPFI DEFIPTVDSN EGLCYTHPQK LPGVKQDGSV 120 SHFFHRTFKA YTTGTKKRRK INTDELGEVR WNKTGKTKPV VIGGTHLGCK KIMVMYASNV 180 KGGKQEKTNW VMHQYHVGTG EDEKDREFVV SKLFYQQQPK AGEKISEGIC DHMEPVYAAV 240 DLADCPPLMD LSSLPLEEDN GNQEVVQKSE HNFDQANSHC EVKDKETLSS CI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 139 | KKRRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.35297 | 0.0 | callus |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot and root apical meristems, in lateral root primordia, in the vasculature of young leaves and in the root stele. {ECO:0000269|PubMed:23907539}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG406100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004955196.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 1e-106 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A3L6QCI3 | 0.0 | A0A3L6QCI3_PANMI; NAC domain-containing protein 8-like | ||||
STRING | Pavir.Aa00442.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6785 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-109 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG406100.1.p |