PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1NG397800.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

G2-like

Protein Properties

Length: 301aa MW: 32130.6 Da PI: 10.4609

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1NG397800.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.2	6.9e-32	22	75	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWt+eLH++Fv+av+ LGG++kAtPk il+lm+v gLt++hvkSHLQ+YR+ Pavir.1NG397800.2.p 22 PRLRWTSELHRSFVRAVDCLGGPDKATPKLILQLMDVRGLTIAHVKSHLQMYRS 75 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.803	18	78	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-30	18	76	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.17E-16	22	75	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-23	22	75	IPR006447	Myb domain, plants
Pfam	PF00249	1.9E-6	23	74	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MSGAGGGSNG VATRRYNRSA VPRLRWTSEL HRSFVRAVDC LGGPDKATPK LILQLMDVRG 60 LTIAHVKSHL QMYRSSGHDM RKREMQPRRG HLKHSFTIDE GGPKEFFCLP MKRAKAGAEA 120 AATATHETMQ GNSDMGAAGT RRCGDDYTRA VPVGSRRITE CLGLQWQRDD ASAASALQEL 180 GFWVRGTEPF KIGRPIANRL SPVVRQLSSK EIKCANRCFL FGAATRDEPG KRRSPSQLPA 240 SVDPTAVAVV SSWPSGGNCV LSPPPSSSTS FSGCSGPGRG SCLFAGQGVN LDLSLSICGS 300 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-17	23	76	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	23	76	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	23	76	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	23	76	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1NG397800.2.p

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT087811	1e-115	BT087811.1 Zea mays full-length cDNA clone ZM_BFb0210E07 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025799208.1	0.0	uncharacterized protein LOC112879085
TrEMBL	A0A3L6QKA4	1e-172	A0A3L6QKA4_PANMI; Uncharacterized protein
STRING	Pavir.Aa00827.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	3e-29	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pavir.1NG397800.2.p