PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG397300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 483aa    MW: 51853.3 Da    PI: 6.9311
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG397300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.10.000733694021654
                          HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          i +++  L++++ +      +K + a++L ++++YIk L
  Pavir.1NG397300.1.p 369 IGEKITALQQIVSPF-----GKTDTASVLFETIKYIKFL 402
                          667888999999887.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.074353402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.91E-4368407No hitNo description
SuperFamilySSF474599.29E-9368415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-7368411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MHLHAAGAVN LQYFMPRHQP HHQEATDLQA QLGSSSAVCR RSSSSSTSQP PPATMWEYHQ  60
AAHAAALQTA SPSAPSFPSW SSSYAGTTAA LLGSGSAFAT DASSPPPDLR LPASAEHGHG  120
HPWDQHGEQS NSTCYRENFL DLLASKNVTQ EMFEDVPSGH YAAQALSGRL GAGSDVAPIK  180
YEATAGSPLF FGSTAPGMHQ GMNMAACYPY SDHHQMKEGS SQQQELAAPA MASFLQQLNS  240
NASTVGMHAG LDYSGIGLDK ICQEGRAMEA SSFGMRSLPD LSSFSGYRSN VESTSSVQSY  300
LRSSNLSADS SKQEQDIVSA ARSSSGGSVA ASDRKKRPSE ERSTSTVKKS KQEGSKPSPP  360
KQQVPKVKIG EKITALQQIV SPFGKTDTAS VLFETIKYIK FLHEQVQLLS EPYTNSSRNK  420
GNLPWVVEHA ETSKGDPDQG QAEHGLRDRG LCLVPVSWTP EVYRDGTAMD YWTPAYRGCL  480
YR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.102120.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG397300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0572541e-126EF057254.1 Panicum virgatum microsatellite PVSSR140 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827067.10.0uncharacterized protein LOC112902284
TrEMBLA0A3L6QF160.0A0A3L6QF16_PANMI; Uncharacterized protein
STRINGPavir.Aa00896.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12698910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31050.11e-34bHLH family protein