PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1NG390900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB_related

Protein Properties

Length: 126aa MW: 15203.6 Da PI: 11.6627

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1NG390900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.2	3.4e-12	14	56	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwq 45 +WT+eEd +l ++ +++G ++W+++a++m + R +c+ rwq Pavir.1NG390900.1.p 14 AWTPEEDVRLECLTREHGFRHWRRVAAHMVsE-RLSRECRGRWQ 56 7***************************65.5555****9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.406	7	65	IPR017930	Myb domain
SMART	SM00717	2.2E-6	11	61	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.44E-10	12	59	IPR009057	Homeodomain-like
Pfam	PF00249	2.5E-10	14	56	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-10	14	71	IPR009057	Homeodomain-like
CDD	cd00167	2.29E-7	14	56	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
MWTAPVLRIK PPPAWTPEED VRLECLTREH GFRHWRRVAA HMVSERLSRE CRGRWQWHHH 60 LARDVYHRAF TSCGVKPYWL FLVHVHHVHG GRTSRIMRRR WREVRDSDAF LSKLWKPRSL 120 VSCHS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1NG390900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025821894.1	4e-46	transcription factor MYB73-like
TrEMBL	A0A2T7F816	4e-45	A0A2T7F816_9POAL; Uncharacterized protein
STRING	Pavir.Aa00842.1.p	1e-85	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8360	13	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23290.1	6e-08	myb domain protein 70

Link Out ? help Back to Top
Phytozome	Pavir.1NG390900.1.p