PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG382700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GATA | ||||||||
Protein Properties | Length: 341aa MW: 35115.1 Da PI: 8.4236 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.5 | 2.5e-20 | 215 | 249 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCgt++TplWR+gp+g+k+LCnaCG++++k+++ Pavir.1NG382700.1.p 215 CANCGTSSTPLWRNGPRGPKSLCNACGIRFKKEER 249 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.1E-18 | 209 | 259 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 8.55E-14 | 211 | 250 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.1E-17 | 213 | 249 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 13.929 | 213 | 245 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 9.21E-14 | 214 | 246 | No hit | No description |
Pfam | PF00320 | 5.0E-18 | 215 | 249 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 215 | 240 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MDVTFHDESN GVRERRVLRD KCEAGIAAAS GSASTSRSVA SSLTGHCARH RIHSASTRTV 60 ASLRTMLRHC TGSSHQSVAA APGTMASTTF SLFFPPPEAQ WPAADEAAAF DDDRSSITTS 120 PSSPSSASSA GSVDCTLSLG TPSSRRAAAA AAAADRAELA KRAALPAYPS ASASPVSWDA 180 AADQSYYCCQ ASKTGAAKVA AARAEHDPLL MDRRCANCGT SSTPLWRNGP RGPKSLCNAC 240 GIRFKKEERR AAATAAMDPH QGAYGYAAQR AQYGYGPAGK QAPGAVPCYG EGAFPCGGGD 300 VADAAEAPFL AWRLNVVAPA PAPAPAFAVW PERAGLFQYN * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000250|UniProtKB:Q6L5E5}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00472 | DAP | Transfer from AT4G36620 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG382700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU967850 | 9e-56 | EU967850.1 Zea mays clone 306547 GATA transcription factor 19 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810273.1 | 1e-115 | GATA transcription factor 15-like | ||||
Swissprot | B8AX51 | 3e-62 | GAT15_ORYSI; GATA transcription factor 15 | ||||
TrEMBL | A0A3L6R8D0 | 1e-123 | A0A3L6R8D0_PANMI; GATA transcription factor 19-like | ||||
STRING | Pavir.J18346.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1665 | 37 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36620.1 | 1e-20 | GATA transcription factor 19 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG382700.1.p |