PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG381000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 304aa MW: 30900 Da PI: 5.5247 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.1 | 3.9e-17 | 88 | 137 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g Pavir.1NG381000.1.p 88 TFRGVRMRV-WGKWVSEIREPRK---KSRIWLGTFQTAEMAARAHDVAALAIKG 137 58****999.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.81E-21 | 88 | 146 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.0E-36 | 88 | 151 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-31 | 88 | 146 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.484 | 88 | 145 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.6E-11 | 89 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-10 | 89 | 100 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.63E-28 | 89 | 147 | No hit | No description |
PRINTS | PR00367 | 5.2E-10 | 111 | 127 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MEADAIHAPT TSSSSDGDSG AGSCVINGAQ ELPSTNGRQH KHVTRKRAAS PPAAPGGRRP 60 PEVAVDEEAS AGAGGRRKMG SAGTRHPTFR GVRMRVWGKW VSEIREPRKK SRIWLGTFQT 120 AEMAARAHDV AALAIKGRAA HLNFPHLAHE LPRPASTSPA DIQVAAAVAA AAAAAAADVE 180 QCVSSHADET SSSSAASSEK VAAGAAKAAE AGATAGVEQC ESSPAAEASS SSAASSVDAA 240 AGHSEESVLF DLPDLLLDGL WSPIWAAAPA AAAEYDGDSL HEPLLWADDD HCWMGAAAPV 300 QTD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-18 | 74 | 146 | 4 | 73 | Ethylene-responsive transcription factor ERF096 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.11109 | 8e-75 | stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG381000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812680.1 | 1e-116 | ethylene-responsive transcription factor ERF038-like | ||||
Swissprot | Q8LBQ7 | 4e-49 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A2T7F9Y0 | 1e-119 | A0A2T7F9Y0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa00832.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 7e-44 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG381000.1.p |
Publications ? help Back to Top | |||
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