PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG373800.5.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 649aa    MW: 68957.2 Da    PI: 6.07
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG373800.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix90.91.4e-2897181187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW+++e+laLi +r+em+ ++r++ lk+plWe+v++k++  g++rs+k+Ckek+en+ k+y+++k+ + +r++++  ++++f qlea
  Pavir.1NG373800.5.p  97 RWPREETLALIGIRTEMDADFRNAPLKAPLWEDVARKLAGLGYRRSAKKCKEKFENVDKYYRRTKDARAGRQDGR--SYRFFAQLEA 181
                          8*********************************************************************86555..5******985 PP
2trihelix104.66.9e-33414499187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW+k+ev+aLi++r+e++e++ ++  +++ We+++++mr+ g++rs+k+Ckekwen+nk+ykk+ke++k+r +e+s+tcpyf+ql+a
  Pavir.1NG373800.5.p 414 RWPKEEVQALIQLRTEKDEQYHDTGGRGHVWEDIAAAMRRIGYNRSAKRCKEKWENINKYYKKVKESNKRR-PEDSKTCPYFHQLDA 499
                          8********************************************************************97.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.8194156IPR001005SANT/Myb domain
PfamPF138372.2E-1996182No hitNo description
CDDcd122038.54E-2797161No hitNo description
PROSITE profilePS500906.74897154IPR017877Myb-like domain
SMARTSM007171.0E-4411473IPR001005SANT/Myb domain
SuperFamilySSF466892.19E-5412482IPR009057Homeodomain-like
PROSITE profilePS500907.979413471IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.8E-5413470IPR009057Homeodomain-like
CDDcd122036.51E-28413478No hitNo description
PfamPF138371.3E-23414500No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MLHHHGGAGS PYMAPTTAGT DPFSPTPTGP ASVAAIIPPP PMVLQAAAAG TTRGNFEELP  60
AGGPSAAAAA GLQDDDLPAD VVGAGGAGAS GSGGGHRWPR EETLALIGIR TEMDADFRNA  120
PLKAPLWEDV ARKLAGLGYR RSAKKCKEKF ENVDKYYRRT KDARAGRQDG RSYRFFAQLE  180
ALHAAAQRQA TGMAAAARGD HQPSATMAWT AAPAEVAGPP AGAGLPDLSF SSMSGSGSES  240
ESDDDLDEGV AGPDKGESGG GGGDDGEMMA IFEGMMRQVT EKQDAMQRVF LDTLERWEAE  300
RTAREEAWRR QEVARMHRER EQLARERAAA ASRDAALMAF LQRVGGGQQG EPVRLPPPVA  360
VALPMPDRTS PSHRHDAAGQ ATSLQPVPAA APPKTEEARA WAGDEGRGGS MPSRWPKEEV  420
QALIQLRTEK DEQYHDTGGR GHVWEDIAAA MRRIGYNRSA KRCKEKWENI NKYYKKVKES  480
NKRRPEDSKT CPYFHQLDAM HRKKRFAGGG SSAAPGAYKA AGAGAGAVTL QEKPNLRELE  540
GESSNDADRL RNDGQGNVHA PPRPGNGETA PTTTENKTAD ETESDDNDMG GDYTEESNDE  600
DQMKYKMAFQ KPNVIGSSGN NAAPAPPATA AAPTSSAAPT SSTFLAVQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG373800.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798824.10.0trihelix transcription factor GTL1-like isoform X1
TrEMBLA0A2T7F9Q00.0A0A2T7F9Q0_9POAL; Uncharacterized protein
STRINGSi016578m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.13e-41Trihelix family protein