PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG369300.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 240aa MW: 25407.6 Da PI: 6.6809 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.3 | 4.2e-09 | 33 | 57 | 23 | 48 |
-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48 +W+ Ia+ ++ gRt++++k++w+++l Pavir.1NG369300.2.p 33 RWSMIAAQLP-GRTDNEIKNYWNTHL 57 7*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00249 | 1.5E-6 | 28 | 57 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.748 | 28 | 57 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 2.26E-8 | 31 | 64 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.6E-13 | 33 | 58 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.27E-6 | 33 | 57 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MCSSVLRSSY LLVMVNGKWS LIGLSGDGSA NLRWSMIAAQ LPGRTDNEIK NYWNTHLKKQ 60 LRRMGLAEPP PGPAAGCPAA RHMAQWETAR LEAEARLSLL ASSSSGAMSA TAATTTTSAS 120 SSSTYAAGAE KAASEPADIF LRLWSSDIGD SFRRRKTAAP PALVKRKDAA VIKQEAPALP 180 GPGDDSSAAS NEKEALEVYQ MLLDFAGEEL GLFHGRHGGF SLFPPHDDVL TEASLDTAF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG369300.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU949409 | 3e-98 | EU949409.1 Zea mays clone 406724 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025791223.1 | 5e-94 | transcription factor MYB41-like | ||||
TrEMBL | A0A3L6QIY2 | 1e-94 | A0A3L6QIY2_PANMI; MYB transcription factor | ||||
STRING | Pavir.Aa01232.1.p | 1e-145 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61250.1 | 1e-15 | myb domain protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG369300.2.p |