PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG369100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 298aa MW: 31795.2 Da PI: 6.4396 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.9 | 2.7e-14 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++ Ed++l d++ ++G g+W++ +++ g++R +k+c++rw +yl Pavir.1NG369100.1.p 15 KGLWSPGEDQKLRDYIIRHGHGCWSALPAKAGLHRNGKSCRLRWINYL 62 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.8 | 3.8e-16 | 69 | 113 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g ++ eE+e +++ lG++ W++Iar+++ gRt++++k++w++yl Pavir.1NG369100.1.p 69 GMFSLEEEETVMSLHATLGTK-WSRIARHLP-GRTDNEVKNYWNSYL 113 56999****************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.741 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.21E-27 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-11 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-12 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-19 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.63E-9 | 18 | 62 | No hit | No description |
PROSITE profile | PS51294 | 23.401 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 69 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-24 | 70 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.64E-11 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MGCKACDKPK PNYRKGLWSP GEDQKLRDYI IRHGHGCWSA LPAKAGLHRN GKSCRLRWIN 60 YLRPGLKHGM FSLEEEETVM SLHATLGTKW SRIARHLPGR TDNEVKNYWN SYLKKRVEGA 120 KEGPSTPATS SGADTEDSHQ SAKPGEDGAA AADRTADSGG SSEPRESSSA DSSCLTGPPR 180 AACRPHAPPK VMFADWLDMD MDCLGGGPGA AAPGLDAAAG VFGAGASTGD RDQHHHQVMS 240 QGSVQVDGPS GVDVSLHGFG DSGASCWEFQ EHFDSIDQMS TTGFCDLLSM SEYFGLN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-23 | 11 | 118 | 3 | 109 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.10392 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG369100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT038744 | 1e-172 | BT038744.1 Zea mays full-length cDNA clone ZM_BFb0323B03 mRNA, complete cds. | |||
GenBank | HQ858714 | 1e-172 | HQ858714.1 Zea mays clone UT1170 MYB transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953256.1 | 0.0 | transcription factor MYB4 | ||||
TrEMBL | A0A3L6QD23 | 0.0 | A0A3L6QD23_PANMI; Myb-related protein Myb4 | ||||
STRING | Pavir.Aa01234.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1707 | 37 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52260.1 | 6e-55 | myb domain protein 19 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG369100.1.p |