PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG354800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 280aa MW: 30620 Da PI: 5.6085 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.1 | 2.5e-51 | 10 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrF P+deelv++yL kkv+++++ ++ evd++ ePw+Lp+ +k + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+ Pavir.1NG354800.1.p 10 LPPGFRFYPSDEELVCHYLLKKVANERIAQ-GTLVEVDLHAREPWELPEVAKLTASEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDR 98 79*************************998.88***************87778889********************************** PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ev ++ +g++vg++ktLvfy+grap+g+k+ Wvmhe+rl Pavir.1NG354800.1.p 99 EVRRSgGGAVVGMRKTLVFYRGRAPNGVKSGWVMHEFRL 137 ***9978889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.71E-61 | 7 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.315 | 10 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.4E-28 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MALREIESTL PPGFRFYPSD EELVCHYLLK KVANERIAQG TLVEVDLHAR EPWELPEVAK 60 LTASEWYFFS FRDRKYATGS RTNRATKTGY WKATGKDREV RRSGGGAVVG MRKTLVFYRG 120 RAPNGVKSGW VMHEFRLDTP HSPPREDWVL CRVFQKMKDD GGDSQDSDSA SSLPAFAGSS 180 HIEPPPEPDH SASLGSGGCY GYLPSQQQEV AVLPQYYYYG AGTGADHHYG FPRDDAAGAL 240 PGFGLGGGDG YGFGYFDMGG GFGDVASFGG GVEFPEVWD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-49 | 5 | 159 | 10 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.33986 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG354800.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT038122 | 0.0 | BT038122.1 Zea mays full-length cDNA clone ZM_BFb0212P24 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822293.1 | 1e-152 | NAC domain-containing protein 100-like | ||||
Swissprot | Q84TE6 | 1e-62 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A2S3GRG4 | 1e-151 | A0A2S3GRG4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa01668.1.p | 1e-178 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 2e-75 | NAC domain containing protein 74 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG354800.1.p |