PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG342600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CO-like
Protein Properties Length: 335aa    MW: 35053.1 Da    PI: 5.025
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG342600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.51.1e-072259438
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                         r C+ +  ++++l+C+ ++ +lC+ C    H g    H 
  Pavir.1NG342600.1.p 22 RPCDACAAEPARLHCRADGAFLCPGCDARAH-GagsrHA 59
                         68**************************999.4466675 PP
2zf-B_box22.91.7e-0761105341
             zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                           + C+ +e+ ++   C+ +   lC+ C   +H+       H++ p
  Pavir.1NG342600.1.p  61 VWLCEVCEHAPAAVTCRADAAALCAACDADIHSAnplarrHERLP 105
                          679*****************************6688888898877 PP
3CCT70.35e-24253295143
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                          Rea+l+RY+eKrk+R+F+K+irY+sRKa+Ae+RpR+KGrF+k+
  Pavir.1NG342600.1.p 253 REARLMRYREKRKNRRFDKTIRYASRKAYAETRPRIKGRFAKR 295
                          9****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.0E-51963IPR000315B-box-type zinc finger
PROSITE profilePS501199.7691963IPR000315B-box-type zinc finger
PfamPF006438.3E-62259IPR000315B-box-type zinc finger
CDDcd000214.12E-72263No hitNo description
PROSITE profilePS5011910.42459106IPR000315B-box-type zinc finger
PfamPF006437.9E-661106IPR000315B-box-type zinc finger
SMARTSM003364.6E-964106IPR000315B-box-type zinc finger
PROSITE profilePS5101716.916253295IPR010402CCT domain
PfamPF062033.0E-18253295IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAAAVELEQK PAVGYWGVAG ARPCDACAAE PARLHCRADG AFLCPGCDAR AHGAGSRHAR  60
VWLCEVCEHA PAAVTCRADA AALCAACDAD IHSANPLARR HERLPVAPFF GALADAPQPF  120
PSAAFATAGG QSQGDAAAAA AADDDGSNEA EAASWLLPEP DTSHEDSAAA TDAFFADSDK  180
YLGVDLDFAR SMDGIKAIGV PVAPPELDIA AGAFYYPEHS MNHSVSSSEV AVVPDVLAGG  240
VPAVPVASRG KEREARLMRY REKRKNRRFD KTIRYASRKA YAETRPRIKG RFAKRCSAEA  300
EDEDEALLEH EEGACFSPAV SAPAASDGVV PSFC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.41830.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG342600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9562390.0EU956239.1 Zea mays clone 1559496 CONSTANS-like protein CO5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811633.10.0zinc finger protein CONSTANS-LIKE 3-like
SwissprotQ9FHH82e-72COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A2T7F8U30.0A0A2T7F8U3_9POAL; Uncharacterized protein
STRINGPavir.Aa01385.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.13e-40CONSTANS-like 3
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]