PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG340000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 301aa    MW: 31248.5 Da    PI: 8.9249
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG340000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12236281655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR ri +++ +L+el+P+     +k  s a++L +A+e+Ik Lq
  Pavir.1NG340000.1.p 236 SIAERERRTRISEKLRKLQELVPNM----DKQTSTADMLDLAIEHIKGLQ 281
                          689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.811230280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.11E-16233294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.74E-13234285No hitNo description
Gene3DG3DSA:4.10.280.106.7E-15235293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-13236286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-10236281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MRRFLPVGGG GGGEPSSSSS SGERAGERAA AAGLRYGGGD ISRGHGHGHG GGGGDAAERQ  60
QDGSMDMLAR HSSSPAGFFS NLMVDNGYPS GGSSGGGAEA HHPSTASGSG GGRRMKPSRL  120
NFTRPPQQAG GAAGGHLSQI SEDGAFPASL VGGDRAGESS GGAARSFSGG FSIVGPWEES  180
RDIIATLSAY DSQYSGAMAG TALEMAAGMD RYMQLQQDQV PFKVRAKRGC ATHPRSIAER  240
ERRTRISEKL RKLQELVPNM DKQTSTADML DLAIEHIKGL QSELQALKHE QEKCTCCRKR  300
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.124920.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG340000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9547251e-106EU954725.1 Zea mays clone 1479278 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808991.11e-160transcription factor bHLH128-like
TrEMBLA0A2S3GQQ41e-158A0A2S3GQQ4_9POAL; Uncharacterized protein
STRINGPavir.Aa01423.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115313141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.11e-46bHLH family protein