PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG328200.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 369aa MW: 40828.4 Da PI: 4.6353 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 60.4 | 5.9e-19 | 57 | 168 | 1 | 96 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra... 77 lp+G++F+P+d+el+ e+L++kv + +e+i+++d i++++P++Lp +k++ ++ +fF++ +k+y+ gkrk+r Pavir.1NG328200.2.p 57 LPAGVKFDPSDSELL-EHLEEKVGLGGsnphvlI--DEFIPTIDndegICYSHPENLP-GMKTDGTSAHFFHRLSKAYNCGKRKRRRvis 142 799************.99****976665666442..333444433445**********.7788999*******************96689 PP NAM 78 .......tksgyWkatgkdkevlskk 96 ++ +W++tg++k++++ + Pavir.1NG328200.2.p 143 csdntvtDDHVRWHKTGRSKPIYDDG 168 999887434889***********952 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-21 | 41 | 187 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 14.969 | 57 | 238 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-4 | 58 | 168 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MARSWLITGR GIAKKIRYTS PNANHRISEL IAEARRECPN CSHVIDNSDV AMQWPGLPAG 60 VKFDPSDSEL LEHLEEKVGL GGSNPHVLID EFIPTIDNDE GICYSHPENL PGMKTDGTSA 120 HFFHRLSKAY NCGKRKRRRV ISCSDNTVTD DHVRWHKTGR SKPIYDDGVK KEEDEKDGDL 180 VVSKIFYQMP NKSMGASETE TAYDEPDASA SVIGPKTPKT NTPQPRHPNN SPCETKQNAS 240 ILQDQLLLQD EEEPTISIVS LEDDAVNPAW CAGAEEQQAV GGASRAQLNP DEPLLCREDP 300 NSLNDKALFP LDYPILSQYR TEILDGNLNT FYGLPDLHNV DLGTPPDLQI GDLQFGSQES 360 LGSWLDRI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 138 | KRKRRR |
2 | 134 | 138 | RKRRR |
3 | 135 | 139 | KRRRV |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot and root apical meristems, in lateral root primordia, in the vasculature of young leaves and in the root stele. {ECO:0000269|PubMed:23907539}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG328200.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818203.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X1 | ||||
Swissprot | Q6NQK2 | 6e-68 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A3L6QEE7 | 0.0 | A0A3L6QEE7_PANMI; NAC domain-containing protein 73-like | ||||
STRING | Pavir.Aa01341.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 6e-59 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG328200.2.p |