PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG327400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 326aa    MW: 34202.4 Da    PI: 9.75
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG327400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.99.2e-1773122255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +gr++AeIrdp    ++  r +lg+f taeeAa a++ a+++++g
  Pavir.1NG327400.1.p  73 RYRGVRRRP-WGRFAAEIRDP----ISkERRWLGTFNTAEEAACAYDIAARAIRG 122
                          69*******.**********7....236999*********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.25E-2672132No hitNo description
SMARTSM003806.5E-3473136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-2973131IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2173131IPR016177DNA-binding domain
PfamPF008471.4E-973122IPR001471AP2/ERF domain
PROSITE profilePS5103222.82773130IPR001471AP2/ERF domain
PRINTSPR003674.0E-97485IPR001471AP2/ERF domain
PRINTSPR003674.0E-996112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MPTHPRSPPA ATPNAISIDR FASGALRAAR QAREGAHLYA HTHGQHHHRS KRPTPPGVMD  60
VDVDGDASPK GARYRGVRRR PWGRFAAEIR DPISKERRWL GTFNTAEEAA CAYDIAARAI  120
RGNKARTNFP VHATAAAYWA WGAPQVAAGA GPLDPTLVHN LLMSSSHHGC RLLHHAGHHG  180
HPSPARPPPP APAPRPTASA SRATAAPAPT SSPAVASSPA AASVDMDVWA RVLRSGPPDA  240
GLLQDALHGF YPGLVPRMEL GGADAVTADQ DPPEALGVAS PCAGDDADEA GVMPQGLLED  300
MIQYRAFLDV VPAPPAATRR GRRQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1870135268ATERF1
3gcc_A1e-1870135268ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG327400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9548771e-102EU954877.1 Zea mays clone 1489895 AP2 domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822050.11e-138ethylene-responsive transcription factor FZP-like
TrEMBLA0A3L6RV541e-162A0A3L6RV54_PANMI; Ethylene-responsive transcription factor 3-like
STRINGPavir.J29008.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72633050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.14e-09ERF family protein