PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG305200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 399aa    MW: 43399.1 Da    PI: 8.7543
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG305200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.4e-19234288256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++keq   Le++F+++++++ +++ +LAkkl+L  rqV vWFqNrRa+ k
  Pavir.1NG305200.1.p 234 RKKLRLSKEQSAFLEDCFKEHSTLTPKQKSDLAKKLNLRPRQVEVWFQNRRARTK 288
                          678899***********************************************98 PP
2HD-ZIP_I/II123.69.4e-40234323191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rlskeq+++LE++F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+ +e+Lkr++++l++en+rL++ev+eLr +
  Pavir.1NG305200.1.p 234 RKKLRLSKEQSAFLEDCFKEHSTLTPKQKSDLAKKLNLRPRQVEVWFQNRRARTKLKQTEVGCEYLKRCCETLAQENRRLHREVAELR-A 322
                          69*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 l 91 
                          l
  Pavir.1NG305200.1.p 323 L 323
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.72E-18227291IPR009057Homeodomain-like
PROSITE profilePS5007116.876230290IPR001356Homeobox domain
SMARTSM003891.8E-16232294IPR001356Homeobox domain
PfamPF000462.8E-16234288IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.5E-18234288IPR009057Homeodomain-like
CDDcd000865.27E-17234291No hitNo description
PROSITE patternPS000270265288IPR017970Homeobox, conserved site
SMARTSM003406.2E-22290333IPR003106Leucine zipper, homeobox-associated
PfamPF021831.4E-9290323IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MPDNHSGTST AMPIFRFYYF KLNTSELIPL LAGPTRLCRP IKRSFLRPKT HSWRVHRGGR  60
IGAPPPCPAA DQSIPASAPP RRPPASPSTP PSSPSDPAAP LVLLAAGKEY HELLLELGVG  120
TARRTGQDNQ RTPTQPGEDA QDQEDDGEAC FRIESPVELS LGCRLLPASA ETGSANSEEC  180
RRGFEVNTVV VDGESVQGRS LSTSSLPMEV PVRQAADLEG AEDEENSGVG GGVRKKLRLS  240
KEQSAFLEDC FKEHSTLTPK QKSDLAKKLN LRPRQVEVWF QNRRARTKLK QTEVGCEYLK  300
RCCETLAQEN RRLHREVAEL RALRTAPYPF YGHLPAAGFS TARMCPSCDA KVITAHHPSI  360
TPTSPAVAPP SPVSTSFARP HFGPFTVVHP RAPPPATS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282290RRARTKLKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG305200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799983.11e-170homeobox-leucine zipper protein HOX7-like
SwissprotA2X6741e-84HOX7_ORYSI; Homeobox-leucine zipper protein HOX7
TrEMBLA0A2T7F7Y81e-176A0A2T7F7Y8_9POAL; Uncharacterized protein
STRINGPavir.Aa01621.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128943035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-58homeobox from Arabidopsis thaliana