PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG302700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 519aa    MW: 54490.8 Da    PI: 4.7732
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG302700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.5e-11323368555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h+++Er RR++i +++ +L+el+P++      + +Ka++L + ++Y+k Lq
  Pavir.1NG302700.1.p 323 HSIAERLRREKISDRMKNLQELVPNS-----NRTDKASMLDEIIDYVKFLQ 368
                          99***********************7.....59*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.08E-12316372No hitNo description
SuperFamilySSF474597.85E-17316379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.18318367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-16320378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-9323368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-13324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MGGFVDPFIP APAWPQDLVF TGSSWSDSAS APLADSAGTY MGAAPDQDTK FHLQNGSSPV  60
LFNGSAKEMV PPVELHEQFL QAQLQDDVTQ GLNFEMDGAL MASTLGSVLS TPCAISLADS  120
APVVCSSNDS SGSEQSGLPQ FILGEQPVPV SPAWPSTFTQ ISSLVGEETS QGFGFGTLSN  180
GDLLREACAA DAKKYPQLGN VPSVPLQLHS DAEFNTGKML SFAPGPRQQN TNFEDLQISQ  240
KEFSGLHHLN LSSLVSGQLS SFNATGVAHN PKQSNEASGG KNGLNAAPLM ARSEVPNGSG  300
IAGNNGAPKP RVRARRGQAT DPHSIAERLR REKISDRMKN LQELVPNSNR TDKASMLDEI  360
IDYVKFLQLQ VKVLSMSRLG ATEAVVPLLT ESQTEVNHSS SGGLLLSPRS GRQQAGGGSL  420
LGQSELRDGA AFEQEVAQLM ENNMTTAMQY LQSKGLCLMP IALASAISDQ KGASSAAVRP  480
ASSAAADEGG AGGEERDATE MLRGLNAFGS AREMRSRA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG302700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9749561e-146EU974956.1 Zea mays clone 461679 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799151.10.0uncharacterized protein LOC112879044
TrEMBLA0A2S3GQ210.0A0A2S3GQ21_9POAL; Uncharacterized protein
STRINGPavir.Aa01634.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.15e-54LJRHL1-like 3