PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1NG299700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 1078aa MW: 120314 Da PI: 8.0103

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1NG299700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52.8	1.3e-16	405	484	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +f+n Y+ e+GF +r +s+k+ ++g +t+++ vCs+eg++++++ + + rtgCk ++++ +++d+ w+++++++ HnH+l+ Pavir.1NG299700.1.p 405 DFFNLYSWEIGFGIRYGRSNKN-NKGYTTRQDIVCSCEGSPRTKNCA---------SIRTGCKVMIRLLRTSDHGWYISRVSTSHNHKLS 484 6******************9.7788*********9987665.........9*****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.0E-13	405	484	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.1E-28	605	698	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.002	887	922	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.2E-4	887	921	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.9E-4	897	924	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1078 aa Download sequence Send to blast
MAEPVKETIA PPPPPREAET MDGGPAAAAA AETADLVPRT SEPAALAVVA PGEETTTTTP 60 PPPPQEAEPT DGVASALDPA LPTAEPARRA PPQEKPDAAA GQPQPPTPTK AEEVAALPPP 120 SERPSQERVA AAVEAEKQVK QQPATPVPAP PQQQQPPQEQ EGGAPEQASS VQEEEKNAAP 180 ARAQEGQEEL ARRRWRWLRA AVNLLFLRPK RKDKDSAAAK PPAPGGKPAV SGLEDKKTTP 240 ADKLHGEDSA GGVLDKPEVK QKDEGEGSKG RMFWCPMADV PTPIDGQVSP EQEGIMNIDL 300 DLGVAEMIRD KFVGVDSGQI EGNGQEGGEA GAEEVELALE AGNVITERRI GWTRKSAREG 360 PSERIAVNEE SAITRALSQA ARNRGSPIFQ PLEGTLFSSS EEARDFFNLY SWEIGFGIRY 420 GRSNKNNKGY TTRQDIVCSC EGSPRTKNCA SIRTGCKVMI RLLRTSDHGW YISRVSTSHN 480 HKLSEGYAEK KQWNSHSMID PSTKYFIKKL RDNNVSIGRV CSIIGVTDSS AMNPVRKETI 540 RSLCAKVARE NMADDIGKTV QLLREMKIKD PLMEVRFKVD EKGTVKSMLW CTGKNRMDYK 600 NFGDVVTFDT TYRTNLYSLP FGIFIGVNCH FQSIIFGGVL LSTETAEDFQ WAFQNFIEMM 660 DGSVPITVLT DQCAAMGKAI RTVLPGTRHR WCRWHVLKSA KKKLGKVIAR HNQFKIDFYN 720 LITNETCVDS FELSWKKLII KYRLVKSKYM LRLYKHREKW AKPYFMSVFC AGMTSTQRSE 780 SANHMLKRYI QKAAPMHLFV SKFNEFLCDR TEQEAREQHV TKMVTRRMRV GAPIEEHADL 840 VYTRAMYEKF YDELFEAGKF CVQREDGNDR FIVSSAKLSS DGVQKKYVVT LHGEDFMSCQ 900 CGLYEHLGML CRHALKVLLH LDRQEIPKFN IMRRWTKEAV VYKAHGEQTD IASDADQMRK 960 KALMLQTLQI VHGPSPVDEQ MFRNAMEALR PADRTQREDP PFDGQYQCSL HDDAGPVPLS 1020 CPPRTMKGGR PPSTGLNAWI SRKDKRTLDS SPRDPISEDW PEEEMPPSKK TRCLKDI*

Sequence ? help Back to Top

Protein Sequence Length: 1078 aa Download sequence Send to blast

MAEPVKETIA PPPPPREAET MDGGPAAAAA AETADLVPRT SEPAALAVVA PGEETTTTTP  60
PPPPQEAEPT DGVASALDPA LPTAEPARRA PPQEKPDAAA GQPQPPTPTK AEEVAALPPP  120
SERPSQERVA AAVEAEKQVK QQPATPVPAP PQQQQPPQEQ EGGAPEQASS VQEEEKNAAP  180
ARAQEGQEEL ARRRWRWLRA AVNLLFLRPK RKDKDSAAAK PPAPGGKPAV SGLEDKKTTP  240
ADKLHGEDSA GGVLDKPEVK QKDEGEGSKG RMFWCPMADV PTPIDGQVSP EQEGIMNIDL  300
DLGVAEMIRD KFVGVDSGQI EGNGQEGGEA GAEEVELALE AGNVITERRI GWTRKSAREG  360
PSERIAVNEE SAITRALSQA ARNRGSPIFQ PLEGTLFSSS EEARDFFNLY SWEIGFGIRY  420
GRSNKNNKGY TTRQDIVCSC EGSPRTKNCA SIRTGCKVMI RLLRTSDHGW YISRVSTSHN  480
HKLSEGYAEK KQWNSHSMID PSTKYFIKKL RDNNVSIGRV CSIIGVTDSS AMNPVRKETI  540
RSLCAKVARE NMADDIGKTV QLLREMKIKD PLMEVRFKVD EKGTVKSMLW CTGKNRMDYK  600
NFGDVVTFDT TYRTNLYSLP FGIFIGVNCH FQSIIFGGVL LSTETAEDFQ WAFQNFIEMM  660
DGSVPITVLT DQCAAMGKAI RTVLPGTRHR WCRWHVLKSA KKKLGKVIAR HNQFKIDFYN  720
LITNETCVDS FELSWKKLII KYRLVKSKYM LRLYKHREKW AKPYFMSVFC AGMTSTQRSE  780
SANHMLKRYI QKAAPMHLFV SKFNEFLCDR TEQEAREQHV TKMVTRRMRV GAPIEEHADL  840
VYTRAMYEKF YDELFEAGKF CVQREDGNDR FIVSSAKLSS DGVQKKYVVT LHGEDFMSCQ  900
CGLYEHLGML CRHALKVLLH LDRQEIPKFN IMRRWTKEAV VYKAHGEQTD IASDADQMRK  960
KALMLQTLQI VHGPSPVDEQ MFRNAMEALR PADRTQREDP PFDGQYQCSL HDDAGPVPLS  1020
CPPRTMKGGR PPSTGLNAWI SRKDKRTLDS SPRDPISEDW PEEEMPPSKK TRCLKDI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1NG299700.1.p

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243236	0.0	AC243236.1 Panicum virgatum clone PV_ABa020-H10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021310926.1	0.0	protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A1B6Q0S6	0.0	A0A1B6Q0S6_SORBI; Uncharacterized protein
STRING	Pavir.J10053.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-78	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.1NG299700.1.p