PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG298900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 335aa    MW: 34955.6 Da    PI: 9.1742
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG298900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.4e-10115163355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +ah + Er RR+r+++ f +L   +P+ +     +K++Ka+ + +++++I+ L+
  Pavir.1NG298900.1.p 115 KAHIITERERRKRMKDLFTNLHAFMPHvP-----TKVDKATLVGETIHFIRALE 163
                          68*************************77.....9****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.462112162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-12114176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-7115163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.20E-9115164No hitNo description
Gene3DG3DSA:4.10.280.102.1E-12116176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-5118168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.856261334IPR002912ACT domain
CDDcd021160.0043262311No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAQNGPHDHH QGAAAASNER SFTPPTTMTF LGPAENHNGG SRIGSPVGMD ARKGKDGVLP  60
NAIQGEEHGS AGCGEANADK SKGKHPAARE AATNAAGHGL PGKGSLAADD GGDAKAHIIT  120
ERERRKRMKD LFTNLHAFMP HVPTKVDKAT LVGETIHFIR ALEQTKAQLE RRKQEQALAR  180
QAAAEAVVST LLSAPQTAHG MAAMSNGWGP AVPQQQQQPL AAAATAPPAP SPPLAVATGL  240
AGFQTWSAPN VVLSVSNEKA IINVCLPRQP RMLTLVMSVL SKHGIDVITV HIGADGPRSL  300
ITIYTRVNVA GGESPSAEDI YKLAVSEIMV WLTT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG298900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821631.11e-175transcription factor bHLH95-like
TrEMBLA0A3L6RQ131e-175A0A3L6RQ13_PANMI; Transcription factor bHLH95-like
STRINGSi017798m1e-156(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-15bHLH family protein