PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG298500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 319aa    MW: 33273.2 Da    PI: 6.1047
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG298500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.5e-10117164455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h ++Er RR+r++++f++L el+P+     s K+ Ka+   +++++Ik L+
  Pavir.1NG298500.1.p 117 VHIIMERERRRRMKDKFNTLHELMPHV----SNKVGKATLIGETINFIKTLE 164
                          599***********************7....79****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.805113163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-13116176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-13117177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-8117164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-7119169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2605.6E-4244293No hitNo description
SuperFamilySSF550213.44E-5244308No hitNo description
PROSITE profilePS5167110.402245318IPR002912ACT domain
CDDcd021163.10E-4246295No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MAQDGHQDTT ASDERSFVPP TTLTFLGPAK NESDDDNRGS RIASPVGMDG HEGKDVVPNA  60
AIQGGDGSAG GGKADSGTSE GKHLATGAAA AAAAGDGSTS NKGKSTLAAV DDGELKVHII  120
MERERRRRMK DKFNTLHELM PHVSNKVGKA TLIGETINFI KTLEETKAQL EKKKLEQALA  180
RQATAEAAAG GASSFSVPRT AHGLAALSDG WDPVPRQQPA AAGPVGFQTW STPNVVLSVL  240
NNEAVINVCV PRQRGVLTMV LSVLSKHGID VISIQVGADD AQSFFNINTR VNGAGGENQS  300
AEDIYKLAVS EIMVWLSN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG298500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821619.11e-152transcription factor bHLH95-like
TrEMBLA0A2T7F7F51e-164A0A2T7F7F5_9POAL; Uncharacterized protein
STRINGPavir.Aa01764.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-18bHLH family protein