PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG261300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GATA | ||||||||
Protein Properties | Length: 227aa MW: 23366.1 Da PI: 7.9095 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.6 | 2.3e-20 | 103 | 137 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++ Pavir.1NG261300.1.p 103 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 137 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.6E-20 | 97 | 149 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 14.483 | 97 | 133 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.66E-14 | 98 | 137 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.5E-17 | 101 | 137 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.29E-13 | 102 | 134 | No hit | No description |
Pfam | PF00320 | 4.9E-18 | 103 | 137 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 103 | 128 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MLQELAPCAC GGFYAGGCGG RCAGAAASAF SMLFPAGADQ CYYYKEEDDG PPYGGGPVDC 60 TLSLGTPSTR RAEAGAGGHA RAAGGGGAPC KDSSGRGSPA RRCANCDTTS TPLWRNGPRG 120 PKSLCNACGI RYKKEERRAA AAVAPAPEPQ EYACGGYARQ HQHQQPPQPQ WGCYGAAAAK 180 SASFGMYGGD VVDAAADGPC LSWMLNVMPS SPAFAVRERP TLFQYY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG261300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806644.1 | 1e-102 | GATA transcription factor 15-like | ||||
TrEMBL | A0A3L6R9P9 | 1e-106 | A0A3L6R9P9_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J03293.1.p | 1e-139 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1665 | 37 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18380.1 | 4e-21 | GATA transcription factor 20 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG261300.1.p |