PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG260500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 170aa    MW: 18261.3 Da    PI: 6.5074
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG260500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74e-16241546
                         -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                         T+eE+el+v++ +++G++ W++Ia++++ gRt++++k++w++
  Pavir.1NG260500.1.p  2 TAEEQELIVQLQARWGNK-WSRIAKHLP-GRTDNEVKNFWRT 41
                         9*****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.1E-10145IPR001005SANT/Myb domain
CDDcd001675.40E-13141No hitNo description
PROSITE profilePS5129422.826147IPR017930Myb domain
PfamPF002493.7E-14241IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-18242IPR009057Homeodomain-like
SuperFamilySSF466892.89E-12249IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MTAEEQELIV QLQARWGNKW SRIAKHLPGR TDNEVKNFWR TKIQPKRHRS SDCSSSAMEA  60
IAMAGICRGM GMAGNSRSTP AITEDQGSSN HSSRTGVTQD YGIVTHQPSI SGVVDQQLGY  120
GVHGPGGGGA GAGAMDMDFF LLELLAASGE NFWAIDDFWT TMQSFHGNG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG260500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808591.14e-92transcription factor MYB24-like
TrEMBLA0A2S3H9I58e-91A0A2S3H9I5_9POAL; Uncharacterized protein
STRINGPavir.J02092.1.p3e-83(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.13e-27myb domain protein 21