PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG259200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 378aa MW: 40192 Da PI: 8.8372 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 60.1 | 4.5e-19 | 238 | 300 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkre+rkq+NRe+Arrs +RK+ae+ee ++ v++L+aeN++L++e+ +l+ ++kl+ e+ Pavir.1NG259200.1.p 238 ERELKREKRKQSNRESARRSKLRKQAETEEMATQVESLTAENTSLRSEIGRLTVSSEKLRLEN 300 89*********************************************************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 1.4E-26 | 1 | 92 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Gene3D | G3DSA:1.20.5.170 | 1.9E-16 | 233 | 297 | No hit | No description |
SMART | SM00338 | 2.3E-20 | 238 | 302 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.7E-17 | 238 | 300 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.277 | 240 | 303 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.25E-10 | 241 | 294 | No hit | No description |
CDD | cd14702 | 1.71E-21 | 243 | 290 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MAHDESVATQ KTGNTASSPK DQPAPSPYPD WSTMQAYYGP GVLPPTYFAP AIAPGHPPAY 60 MWGPQPLMPH PFGTPYAAMY PHGAAYPHPL VPMVSNPLSV EPTKSATSKD KSSNKKLKEI 120 DRTPVSAGSG NSKRTMSSSE DYSAEGSSDV NDQKVNKTSR KLSSVDGPAA RIEGVIAPNH 180 TLANTAILPQ HCFPAPVIKP SATNVDNSRA MGASISPSPG VIVPPHTGGP TDLSIKDERE 240 LKREKRKQSN RESARRSKLR KQAETEEMAT QVESLTAENT SLRSEIGRLT VSSEKLRLEN 300 SALMVKLKDP EVPAPTDPSP NKAAASSPSP RPAAENFLSM IDGTTSAPGV SWHTEHGEPK 360 LRQLLDSNPS TDVAAVS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.16938 | 0.0 | callus| leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG259200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807251.1 | 0.0 | common plant regulatory factor 1-like isoform X1 | ||||
TrEMBL | A0A2S3H9G5 | 0.0 | A0A2S3H9G5_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7EA65 | 0.0 | A0A2T7EA65_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J01411.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2776 | 38 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46270.2 | 2e-47 | G-box binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG259200.1.p |