PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG258200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 648aa    MW: 76485.3 Da    PI: 10.0304
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG258200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR141.73.9e-131292290
                 FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                         f n Y++  GF v k +++k+      +k  ++C+k+ k++e k+  +k+r+++ ++ t+Ck ++ v ++ +g+w+ ++++l HnH+l+
  Pavir.1NG258200.1.p 12 FVNIYGQVNGFAVFKGRNYKN------KKIFLMCNKSKKAAEPKNP-HKKRKRSYVKGTSCKMRIIVVLQ-QGRWKFSDVDLVHNHDLV 92
                         7789****************9......45679******99999988.99999*****************9.9***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-101292IPR004330FAR1 DNA binding domain
PfamPF105511.3E-33216309IPR018289MULE transposase domain
PROSITE profilePS509669.297447483IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MSFDTLDDAH RFVNIYGQVN GFAVFKGRNY KNKKIFLMCN KSKKAAEPKN PHKKRKRSYV  60
KGTSCKMRII VVLQQGRWKF SDVDLVHNHD LVSSPSLTKF FINHRYMTVE EKIFSRILQE  120
ARIKPRRIMQ IFRKMKGSFK NMNFGRTQLK NLKQADRKQK MRNTDIDSTM NYVKKMQKQH  180
PGFYYTMRTD DNNTVRSIFW TDASSRLNYK LYGDFISFDT TFSTNKYNMP FAPLVGINGH  240
GRTVVFGYAL LENQTAETFS WLFNVLLEVM DGRRPEIIIT DQDAAMKKAI FEVFGTKVHR  300
NCFWHIMRNA RENLGTLLKD IENLGKELEK LIYESISREE FDEGWTAIIE KYGLQENSSL  360
KLMWKNRHMW VPAYFMDVFF PFIKTTGRSE STNSSFKDYV LRKDSIETFL RQCEIFQEEQ  420
AEIERRDRFE SNVQEPHEDI EFYRKTFTIE VDQNYNSFNC ICKKYNRDGI VCCHVLRLFT  480
QLGIHKIPDN YIKQRWTKSY LEEELKRHKL KGLEQIVDCG DDPIFRHAMM MNSLSEMCSK  540
VCKDSERSEK FMKEVQMIFD RMECEENASQ STDLVVYKDP AIVEVVSVDK GHRLCRPAEK  600
SSMQKIQKDK TAKEKAAKMK ENATPKKKQI SKQPPKKKAR QKQMLVK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14755PKNPHKKRK
25257KKRKRS
3120128ARIKPRRIM
4634640PKKKARQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG258200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825589.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0A9T3X60.0A0A0A9T3X6_ARUDO; Uncharacterized protein
STRINGPavir.J10440.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-72FAR1-related sequence 5