PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG249600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 307aa MW: 33239.1 Da PI: 5.4749 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.5 | 8.6e-10 | 150 | 193 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+ ++ + + g+ Wk+ + + R++ q+ s++qky Pavir.1NG249600.2.p 150 PWTLDEHSHFLAGLDNYKGN-WKAMSMEYLPSRSASQIASHYQKY 193 8*****************88.****755555*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.566 | 143 | 198 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.94E-9 | 145 | 198 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-5 | 147 | 196 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 7.1E-8 | 148 | 196 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 3.64E-4 | 150 | 193 | No hit | No description |
Pfam | PF00249 | 7.5E-7 | 150 | 193 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-8 | 150 | 196 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MPHDEHAAAP PPPAAPEPEP EPEREPTWTR RDDKCLELLL VTTSIVPIHF ASDIIGKTPA 60 QMERRCRFMF AELRHVLEAQ DGETPPEWDM EVAAAAEAPA AEGEAPEPPA PSALPVAAEE 120 DSALPTAVGG GGGGTPEGRQ VRRRKSKAVP WTLDEHSHFL AGLDNYKGNW KAMSMEYLPS 180 RSASQIASHY QKYQNRKKQR KRDECKRASI HDITEPASAA VVAVAGGDAA AAWRKGDGDL 240 PRVVASARGK EDEPREPQVQ SGEPTRGGDG PAGTGEEFPG PDDPGTLLTY RRAKRLYTYI 300 YGRMAI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 146 | RRRKSK |
2 | 195 | 201 | RKKQRKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG249600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821294.1 | 2e-89 | 11-beta-hydroxysteroid dehydrogenase 1B-like | ||||
TrEMBL | A0A3L6QFU2 | 1e-117 | A0A3L6QFU2_PANMI; Transcription factor DIVARICATA-like | ||||
STRING | Pavir.Aa02423.1.p | 1e-170 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 2e-11 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG249600.2.p |